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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = OXE

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	synthetic construct (4)
	Homo sapiens (3)
	Pseudomonas aeruginosa (2)
	Tequatrovirus T4 (2)
	Clostridium acetobutylicum (1)

Taxonomy

	other sequences (4)
	Bacteria (3)
	Eukaryota (3)
	Duplodnaviria (2)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (4)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (1)
	2015 - 2019 (2)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (2)
	Lyases (1)
	Isomerases (1)

Symmetry Type

	Asymmetric (6)
	Cyclic (1)
	Dihedral (1)

SCOP Classification

Alpha and beta proteins (a+b) (1)

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1 to 8 of 8 Structures

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188L \| pdb_0000188l	Download File View File

SPECIFICITY OF LIGAND BINDING IN A BURIED NON-POLAR CAVITY OF T4 LYSOZYME: LINKAGE OF DYNAMICS AND STRUCTURAL PLASTICITY

Morton, A., Matthews, B.W.

(1995) Biochemistry 34: 8576-8588

Released	1995-07-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)
Unique Ligands	CL, HED, OXE

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3E0X \| pdb_00003e0x	Download File View File

The crystal structure of a Lipase-esterase related protein from Clostridium acetobutylicum ATCC 824

Tan, K., Sather, A., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Clostridium acetobutylicum
Macromolecule	Lipase-esterase related protein (protein)
Unique Ligands	OXE

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5NEY \| pdb_00005ney	Download File View File

Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa

Reymond, J.-L., Darbre, T., Stocker, A., Hong, W., van Delden, C., Koehler, T., Luscher, A., Visini, R., Fu, Y., Di Bonaventura, I., He, R.

(2017) Chem Sci 8: 7464-7475

Released	2017-09-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Pseudomonas aeruginosa synthetic construct
Macromolecule	CYS-TRD-TRP-LYD-LYS-LYD-LYS-LYD-TRP-TRD-CYS-ALA (protein) Fucose-binding lectin II (PA-IIL) (protein)
Unique Ligands	CA, OXE, ZDC

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5NF0 \| pdb_00005nf0	Download File View File

Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa

Reymond, J.-L., Darbre, T., Stocker, A., Hong, W., van Delden, C., Koehler, T., Luscher, A., Visini, R., Fu, Y., Di Bonaventura, I., He, R.

(2017) Chem Sci 8: 7464-7475

Released	2017-09-13
Method	X-RAY DIFFRACTION 1.271 Å
Organisms	Pseudomonas aeruginosa synthetic construct
Macromolecule	CYD-TRP-TRD-LYS-LYD-LYS-LYD-LYS-TRD-TRP-CYD-GLY (protein) Fragment of ligand (protein) Fucose-binding lectin II (PA-IIL) (protein)
Unique Ligands	CA, OXE, ZDC

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7L3C \| pdb_00007l3c	Download File View File

T4 Lysozyme L99A - o-xylene - RT

Fischer, M., Bradford, S.Y.C.

(2021) Chem Sci 12: 11275-11293

Released	2021-10-27
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Tequatrovirus T4
Macromolecule	Endolysin (protein)
Unique Ligands	BME, CL, OXE, TRS

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7NBG \| pdb_00007nbg	Download File View File

Crystal structure of human serine racemase in complex with DSiP fragment Z52314092, XChem fragment screen.

Koulouris, C.R., Roe, S.M.

(2022) Commun Biol 5: 346-346

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Serine racemase (protein)
Unique Ligands	CA, EDO, GOL, MG, NA, OXE, PG0, PGE, PLP, U78

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7ZKR \| pdb_00007zkr	Download File View File

Human GABARAP in complex with stapled peptide Pen3-ortho

Ueffing, A., Brown, H., Willbold, D., Kritzer, J.A., Weiergraeber, O.H.

(2022) J Am Chem Soc 144: 14687-14697

Released	2022-08-31
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) Pen3-ortho (protein)
Unique Ligands	CL, OXE, PO4

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7ZL7 \| pdb_00007zl7	Download File View File

Human GABARAP in complex with stapled peptide Pen8-ortho

Ueffing, A., Brown, H., Willbold, D., Kritzer, J.A., Weiergraeber, O.H.

(2022) J Am Chem Soc 144: 14687-14697

Released	2022-08-31
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Gamma-aminobutyric acid receptor-associated protein (protein) Pen8-ortho (protein)
Unique Ligands	CL, NA, OXE

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

188L | pdb_0000188l

SPECIFICITY OF LIGAND BINDING IN A BURIED NON-POLAR CAVITY OF T4 LYSOZYME: LINKAGE OF DYNAMICS AND STRUCTURAL PLASTICITY

3E0X | pdb_00003e0x

The crystal structure of a Lipase-esterase related protein from Clostridium acetobutylicum ATCC 824

5NEY | pdb_00005ney

Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa

5NF0 | pdb_00005nf0

Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa

7L3C | pdb_00007l3c

T4 Lysozyme L99A - o-xylene - RT

7NBG | pdb_00007nbg

Crystal structure of human serine racemase in complex with DSiP fragment Z52314092, XChem fragment screen.

7ZKR | pdb_00007zkr

Human GABARAP in complex with stapled peptide Pen3-ortho

7ZL7 | pdb_00007zl7

Human GABARAP in complex with stapled peptide Pen8-ortho

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

188L | pdb_0000188l

3E0X | pdb_00003e0x

5NEY | pdb_00005ney

5NF0 | pdb_00005nf0

7L3C | pdb_00007l3c

7NBG | pdb_00007nbg

7ZKR | pdb_00007zkr

7ZL7 | pdb_00007zl7