RCSB PDB: Search

1VYW \| pdb_00001vyw	Download File View File

Structure of CDK2/Cyclin A with PNU-292137

Pevarello, P., Brasca, M.G., Amici, R., Orsini, P., Traquandi, G., Corti, L., Piutti, C., Sansonna, P., Villa, M., Pierce, B.S., Pulici, M., Giordano, P., Martina, K., Fritzen, E.L., Nugent, R.A., Casale, E., Cameron, A., Ciomei, M., Roletto, F., Isacchi, A., Fogliatto, G., Pesenti, E., Pastori, W., Marsiglio, A., Leach, K.L., Clare, P.M., Fiorentini, F., Varasi, M., Vulpetti, A., Warpehoski, M.A.

(2004) J Med Chem 47: 3367

Released	2004-06-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN A2 (protein)
Unique Ligands	292, SO4

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1VYZ \| pdb_00001vyz	Download File View File

Structure of CDK2 complexed with PNU-181227

Pevarello, P., Brasca, M.G., Amici, R., Orsini, P., Traquandi, G., Corti, L., Piutti, C., Sansonna, P., Villa, M., Pierce, B.S., Pulici, M., Giordano, G., Martina, K., Lfritzen, E., Nugent, R.A., Casale, E., Cameron, A., Ciomei, M., Roletto, F., Isacchi, A., Fogliatto, G., Pesenti, E., Pastori, W., Marsiglio, W., Leach, K.L., Clare, P.M., Fiorentini, F., Varasi, M., Vulpetti, A., Warpehoski, M.A.

(2004) J Med Chem 47: 3367

Released	2004-06-17
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein)
Unique Ligands	N5B

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2BPM \| pdb_00002bpm	Download File View File

STRUCTURE OF CDK2-CYCLIN A WITH PHA-630529

Cameron, A., Fogliatto, G., Pevarello, P., Brasca, M.G., Orsini, P., Traquandi, G., Longo, A., Nesi, M., Orzi, F., Piutti, C., Sansonna, P., Varasi, M., Vulpetti, A., Roletto, F., Alzani, R., Ciomei, M., Albanese, C., Pastori, W., Marsiglio, A., Pesenti, E., Fiorentini, F., Bischoff, J.R., Mercurio, C.

(2005) J Med Chem 48: 2944

Released	2005-12-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN A2 (protein)
Unique Ligands	529, SO4

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2WIH \| pdb_00002wih	Download File View File

STRUCTURE OF CDK2-CYCLIN A WITH PHA-848125

Brasca, M.G., Amboldi, N., Ballinari, D., Cameron, A.D., Casale, E., Cervi, G., Colombo, M., Colotta, F., Croci, V., Dalessio, R., Fiorentini, F., Isacchi, A., Mercurio, C., Moretti, W., Panzeri, A., Pastori, W., Pevarello, P., Quartieri, F., Roletto, F., Traquandi, G., Vianello, P., Vulpetti, A., Ciomei, M.

(2009) J Med Chem 52: 5152

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN-A2 (protein)
Unique Ligands	P48, SO4

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2WIP \| pdb_00002wip	Download File View File

STRUCTURE OF CDK2-CYCLIN A COMPLEXED WITH 8-ANILINO-1-METHYL-4,5-DIHYDRO- 1H-PYRAZOLO[4,3-H] QUINAZOLINE-3-CARBOXYLIC ACID

Brasca, M.G., Amboldi, N., Ballinari, D., Cameron, A.D., Casale, E., Cervi, G., Colombo, M., Colotta, F., Croci, V., Dalessio, R., Fiorentini, F., Isacchi, A., Mercurio, C., Moretti, W., Panzeri, A., Pastori, W., Pevarello, P., Quartieri, F., Roletto, F., Traquandi, G., Vianello, P., Vulpetti, A., Ciomei, M.

(2009) J Med Chem 52: 5152

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN-A2 (protein)
Unique Ligands	P49, SO4

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2WPA \| pdb_00002wpa	Download File View File

Optimisation of 6,6-Dimethyl Pyrrolo 3,4-c pyrazoles: Identification of PHA-793887, a Potent CDK Inhibitor Suitable for Intravenous Dosing

Brasca, M.G., Albanese, C., Alzani, R., Amici, R., Avanzi, N., Ballinari, D., Bischoff, J., Borghi, D., Casale, E., Croci, V., Fiorentini, F., Isacchi, A., Mercurio, C., Nesi, M., Orsini, P., Pastori, W., Pesenti, E., Pevarello, P., Roussel, P., Varasi, M., Volpi, D., Vulpetti, A., Ciomei, M.

(2010) Bioorg Med Chem 18: 1844

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN A2 (protein)
Unique Ligands	889, SO4

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2WXV \| pdb_00002wxv	Download File View File

Structure of CDK2-CYCLIN A with a Pyrazolo(4,3-h) quinazoline-3- carboxamide inhibitor

Traquandi, G., Ciomei, M., Ballinari, D., Casale, E., Colombo, N., Croci, V., Fiorentini, F., Isacchi, A., Longo, A., Mercurio, C., Panzeri, A., Pastori, W., Pevarello, P., Volpi, D., Roussel, P., Vulpetti, A., Brasca, M.G.

(2010) J Med Chem 53: 2171

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN-A2 (protein)
Unique Ligands	SO4, WXV

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5FTO \| pdb_00005fto	Download File View File

Crystal structure of the ALK kinase domain in complex with Entrectinib

Bossi, R., Canevari, G., Fasolini, M., Menichincheri, M., Ardini, E., Magnaghi, P., Avanzi, N., Banfi, P., Buffa, L., Ceriani, L., Colombo, M., Corti, L., Donati, D., Felder, E., Fiorelli, C., Fiorentini, F., Galvani, A., Isacchi, A., Lombardi Borgia, A., Marchionni, C., Nesi, M., Orrenius, C., Panzeri, A., Perrone, E., Pesenti, E., Rusconi, L., Saccardo, M.B., Vanotti, E., Orsini, P.

(2016) J Med Chem 59: 3392

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	ALK TYROSINE KINASE RECEPTOR (protein)
Unique Ligands	YMX

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5FTQ \| pdb_00005ftq	Download File View File

Crystal structure of the ALK kinase domain in complex with Cmpd 17

Bossi, R., Canevari, G., Fasolini, M., Menichincheri, M., Ardini, E., Magnaghi, P., Avanzi, N., Banfi, P., Buffa, L., Ceriani, L., Colombo, M., Corti, L., Donati, D., Felder, E., Fiorelli, C., Fiorentini, F., Galvani, A., Isacchi, A., Lombardi Borgia, A., Marchionni, C., Nesi, M., Orrenius, C., Panzeri, A., Perrone, E., Pesenti, E., Rusconi, L., Saccardo, M.B., Vanotti, E., Orsini, P.

(2016) J Med Chem 59: 3392

Released	2016-04-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	ALK TYROSINE KINASE RECEPTOR (protein)
Unique Ligands	GOL, U4W

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6HNS \| pdb_00006hns	Download File View File

Structure of Nitrincola lacisaponensis flavin-containing monooxygenase (FMO) in complex with FAD and NADP+

Fiorentini, F., Mattevi, A.

(2019) Appl Microbiol Biotechnol 103: 1755-1764

Released	2019-01-02
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Nitrincola lacisaponensis
Macromolecule	Small molecule metabolism (protein)
Unique Ligands	FAD, MG, NAP

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6HQD \| pdb_00006hqd	Download File View File

Cytochrome P450-153 from Pseudomonas sp. 19-rlim

Fiorentini, F., Mattevi, A.

(2018) Biochemistry 57: 6701-6714

Released	2018-12-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas sp. 19-rlim
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	GOL, HEM, PGE, SRT

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6HQG \| pdb_00006hqg	Download File View File

Cytochrome P450-153 from Phenylobacterium zucineum

Fiorentini, F., Mattevi, A.

(2018) Biochemistry 57: 6701-6714

Released	2018-12-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Phenylobacterium zucineum HLK1
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	HEM

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6HQW \| pdb_00006hqw	Download File View File

Cytochrome P450-153 from Novosphingobium aromaticivorans

Fiorentini, F., Mattevi, A.

(2018) Biochemistry 57: 6701-6714

Released	2018-12-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Novosphingobium aromaticivorans
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	HEM

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6SE3 \| pdb_00006se3	Download File View File

Crystal Structure of Ancestral Flavin-containing monooxygenase (FMO) 3-6

Nicoll, C., Bailleul, G., Fiorentini, F., Mascotti, M.L., Fraaije, M., Mattevi, A.

(2020) Nat Struct Mol Biol 27: 14-24

Released	2019-12-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	synthetic construct
Macromolecule	Ancestral Flavin-containing monooxygenase (FMO) 3-6 (protein)
Unique Ligands	FAD, NAP, OXY

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6SEK \| pdb_00006sek	Download File View File

Crystal Structure of Ancestral Flavin-containing monooxygenase (FMO) 5

Nicoll, C., Bailleul, G., Fiorentini, F., Mascotti, M.L., Fraaije, M., Mattevi, A.

(2020) Nat Struct Mol Biol 27: 14-24

Released	2019-12-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	synthetic construct
Macromolecule	Ancestral Flavin-containing monooxygenase 5 (protein)
Unique Ligands	EPE, FAD, GLC, LMT, NAP

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6SEM \| pdb_00006sem	Download File View File

Crystal Structure of Ancestral Flavin-containing monooxygenase (FMO) 2

Nicoll, C., Bailleul, G., Fiorentini, F., Mascotti, M.L., Fraaije, M., Mattevi, A.

(2020) Nat Struct Mol Biol 27: 14-24

Released	2019-12-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	synthetic construct
Macromolecule	Ancestral Flavin-containing monooxygenase (FMO) 2 (protein)
Unique Ligands	FAD

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6SF0 \| pdb_00006sf0	Download File View File

Crystal Structure of Ancestral Flavin-containing monooxygenase (FMO) 2 in the presence of NADP+

Nicoll, C., Bailleul, G., Fiorentini, F., Mascotti, M.L., Fraaije, M., Mattevi, A.

(2020) Nat Struct Mol Biol 27: 14-24

Released	2019-12-25
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	synthetic construct
Macromolecule	Ancestral Flavin-containing monooxygenase (FMO) 2 (protein)
Unique Ligands	FAD, MA4, NAP

1VYW | pdb_00001vyw

Structure of CDK2/Cyclin A with PNU-292137

1VYZ | pdb_00001vyz

Structure of CDK2 complexed with PNU-181227

2BPM | pdb_00002bpm

STRUCTURE OF CDK2-CYCLIN A WITH PHA-630529

2WIH | pdb_00002wih

STRUCTURE OF CDK2-CYCLIN A WITH PHA-848125

2WIP | pdb_00002wip

STRUCTURE OF CDK2-CYCLIN A COMPLEXED WITH 8-ANILINO-1-METHYL-4,5-DIHYDRO- 1H-PYRAZOLO[4,3-H] QUINAZOLINE-3-CARBOXYLIC ACID

2WPA | pdb_00002wpa

Optimisation of 6,6-Dimethyl Pyrrolo 3,4-c pyrazoles: Identification of PHA-793887, a Potent CDK Inhibitor Suitable for Intravenous Dosing

2WXV | pdb_00002wxv

Structure of CDK2-CYCLIN A with a Pyrazolo(4,3-h) quinazoline-3- carboxamide inhibitor

5FTO | pdb_00005fto

Crystal structure of the ALK kinase domain in complex with Entrectinib

5FTQ | pdb_00005ftq

Crystal structure of the ALK kinase domain in complex with Cmpd 17

6HNS | pdb_00006hns

Structure of Nitrincola lacisaponensis flavin-containing monooxygenase (FMO) in complex with FAD and NADP+

6HQD | pdb_00006hqd

Cytochrome P450-153 from Pseudomonas sp. 19-rlim

6HQG | pdb_00006hqg

Cytochrome P450-153 from Phenylobacterium zucineum

6HQW | pdb_00006hqw

Cytochrome P450-153 from Novosphingobium aromaticivorans

6SE3 | pdb_00006se3

Crystal Structure of Ancestral Flavin-containing monooxygenase (FMO) 3-6

6SEK | pdb_00006sek

Crystal Structure of Ancestral Flavin-containing monooxygenase (FMO) 5

6SEM | pdb_00006sem

Crystal Structure of Ancestral Flavin-containing monooxygenase (FMO) 2

6SF0 | pdb_00006sf0

Crystal Structure of Ancestral Flavin-containing monooxygenase (FMO) 2 in the presence of NADP+

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1VYW | pdb_00001vyw

1VYZ | pdb_00001vyz

2BPM | pdb_00002bpm

2WIH | pdb_00002wih

2WIP | pdb_00002wip

2WPA | pdb_00002wpa

2WXV | pdb_00002wxv

5FTO | pdb_00005fto

5FTQ | pdb_00005ftq

6HNS | pdb_00006hns

6HQD | pdb_00006hqd

6HQG | pdb_00006hqg

6HQW | pdb_00006hqw

6SE3 | pdb_00006se3

6SEK | pdb_00006sek

6SEM | pdb_00006sem

6SF0 | pdb_00006sf0