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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = RU

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Search Summary

This query matches 52 Structures.

Refinements

Structure Determination Methodology

experimental (52)

Scientific Name of Source Organism

	Gallus gallus (26)
	Homo sapiens (9)
	Equus caballus (5)
	Escherichia coli (3)
	Escherichia coli K-12 (3)
	Bos taurus (2)
	Bacillus thermoproteolyticus (1)
	Trametes versicolor (1)
	Xenopus laevis (1)

Taxonomy

	Eukaryota (44)
	Bacteria (7)

Experimental Method

X-RAY DIFFRACTION (52)

Polymer Entity Type

	Protein (51)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (12)
	1.5 - 2.0 (26)
	2.0 - 2.5 (7)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (16)
	2015 - 2019 (21)
	2020 - 2024 (14)

Enzyme Classification Name

	Hydrolases (33)
	Lyases (3)
	Oxidoreductases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (43)
	Octahedral (6)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a+b) (25)
	All alpha proteins (7)
	Alpha and beta proteins (a/b) (5)
	Multi-domain proteins (alpha and beta) (3)
	All beta proteins (1)

AllSelected

1 to 25 of 52 Structures

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1O3Z	Download File View File

HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED

Ennifar, E., Walter, P., Dumas, P.

(2003) Nucleic Acids Res 31: 2671-2682

Released	2003-05-27
Method	X-RAY DIFFRACTION 2.65 Å
Macromolecule	HIV-1 DIS(MAL) GENOMIC RNA (nucleic acid)
Unique Ligands	MG, RU

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2XJW	Download File View File

Lysozyme-CO releasing molecule adduct

Santos-Silva, T., Mukhopadhyay, A., Romao, M.J.

(2011) J Am Chem Soc 133: 1192

Released	2011-01-26
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL, CMO, NA, RU

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3FXS	Download File View File

Metal exchange in thermolysin

Englert, L., Heine, A., Klebe, G.

To be published

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	Thermolysin (protein)
Unique Ligands	CA, GOL, RU

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3M1J	Download File View File

The crystal structure of a NAMI A-Carbonic Anhydrase II adduct discloses the mode of action of this novel anticancer metallodrug

Temperini, C., Messori, L.

(2010) ChemMedChem 5: 1989-1994

Released	2011-01-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	DMS, IMD, MBO, RU, ZN

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3MNN	Download File View File

A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core

Ong, M.S., Davey, C.A.

(2011) Chemistry 17: 3562-3566

Released	2011-04-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MG, MML, PTW, RU, SO4

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3O7R	Download File View File

Crystal structure of Ru(p-cymene)/apo-H49AFr

Takezawa, Y., Bockmann, P., Sugi, N., Wang, Z., Abe, S., Murakami, T., Hikage, T., Erker, G., Watanabe, Y., Kitagawa, S., Ueno, T.

(2011) J Chem Soc ,dalton Trans 40: 2190-2195

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Equus caballus
Macromolecule	Ferritin light chain (protein)
Unique Ligands	CD, EDO, RU, SO4

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3O7S	Download File View File

Crystal structure of Ru(p-cymene)/apo-Fr

Takezawa, Y., Bockmann, P., Sugi, N., Wang, Z., Abe, S., Murakami, T., Hikage, T., Erker, G., Watanabe, Y., Kitagawa, S., Ueno, T.

(2011) J Chem Soc ,dalton Trans 40: 2190-2195

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Equus caballus
Macromolecule	Ferritin light chain (protein)
Unique Ligands	CD, EDO, MML, RU, SO4

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3W6A	Download File View File

Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked wiht 5mM [Ru(benzene)Cl2]2

Tabe, H., Abe, S., Hikage, T., Kitagawa, S., Ueno, T.

(2014) Chem Asian J 9: 1373-1378

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	ACT, CL, NA, RBN, RU

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3WVU	Download File View File

Crystal Structure of RuCO/apo-R52CFr

Fujita, K., Tanaka, Y., Abe, S., Hikage, T., Kuchimaru, T., Kizaka-Kondoh, S., Ueno, T.

(2014) J Am Chem Soc 136: 16902-16908

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Equus caballus
Macromolecule	Ferritin light chain (protein)
Unique Ligands	CD, EDO, RU, SO4

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3WVV	Download File View File

Crystal Structure of RuCO/apo-E45C_C48AFr

Fujita, K., Tanaka, Y., Abe, S., Hikage, T., Kuchimaru, T., Kizaka-Kondoh, S., Ueno, T.

(2014) J Am Chem Soc 136: 16902-16908

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Equus caballus
Macromolecule	Ferritin light chain (protein)
Unique Ligands	CD, EDO, RU, SO4

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3WVW	Download File View File

Crystal structure of RuCO/apo-WTFr

Fujita, K., Tanaka, Y., Abe, S., Hikage, T., Kuchimaru, T., Kizaka-Kondoh, S., Ueno, T.

(2014) J Am Chem Soc 136: 16902-16908

Released	2015-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Equus caballus
Macromolecule	Ferritin light chain (protein)
Unique Ligands	CD, EDO, RU, RU1, SO4

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4J1A	Download File View File

X-ray structure of the adduct between hen egg white lysozyme and AziRu (green crystal)

Vergara, A., Merlino, A.

(2013) Inorg Chem 52: 4157-4159

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA, RU

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4J1B	Download File View File

X-ray structure of the adduct between hen egg white lysozyme and AziRu (black crystal)

Vergara, A., Merlino, A.

(2013) Inorg Chem 52: 4157-4159

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA, RU

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4L55	Download File View File

X-ray structure of the adduct between bovine pancreatic ribonuclease and AziRu

Vergara, A., Russo Krauss, I., Merlino, A.

(2013) Inorg Chem 52: 10714-10716

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease pancreatic (protein)
Unique Ligands	RU

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4NY5	Download File View File

X-ray structure of the adduct formed between hen egg white lysozyme and NAMI-A

Messori, L., Merlino, A.

(2014) Dalton Trans 43: 6128-6131

Released	2014-03-26
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA, RU

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4UWN	Download File View File

Lysozyme soaked with a ruthenium based CORM with a methione oxide ligand (complex 6b)

Santos, M.F.A., Mukhopadhyay, A., Romao, M.J., Romao, C.C., Santos-Silva, T.

(2015) Dalton Trans 44: 5058

Released	2014-12-10
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL, CMO, GOL, NA, RU

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4UWU	Download File View File

Lysozyme soaked with a ruthenium based CORM with a pyridine ligand (complex 7)

Santos, M.F.A., Mukhopadhyay, A., Romao, M.J., Romao, C.C., Santos-Silva, T.

(2015) Dalton Trans 44: 5058

Released	2014-12-10
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL, CMO, FMT, NA, RU

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4UWV	Download File View File

Lysozyme soaked with a ruthenium based CORM with a pyridine ligand (complex 8)

Santos, M.F.A., Mukhopadhyay, A., Romao, M.J., Romao, C.C., Santos-Silva, T.

(2015) Dalton Trans 44: 5058

Released	2014-12-10
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL, CMO, NA, RU

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4W94	Download File View File

Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2

Tabe, H., Fujita, K., Abe, S., Tsujimoto, M., Kuchimaru, T., Kizaka-Kondo, S., Takano, M., Kitagawa, S., Ueno, T.

(2015) Inorg Chem 54: 215-220

Released	2014-12-31
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, DMF, NA, RU, RU1

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4W96	Download File View File

Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2 followed by the reaction in deoxy-myoglobin solution

Tabe, H., Fujita, K., Abe, S., Tsujimoto, M., Kuchimaru, T., Kizaka-Kondo, S., Takano, M., Kitagawa, S., Ueno, T.

(2015) Inorg Chem 54: 215-220

Released	2014-12-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, DMF, NA, RU, RU1

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5IFO	Download File View File

X-ray structure of HSA-Myr-KP1019

Bijelic, A., Theiner, S., Keppler, B.K., Rompel, A.

(2016) J Med Chem 59: 5894-5903

Released	2016-06-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Serum albumin (protein)
Unique Ligands	MYR, RU

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5JLG	Download File View File

The X-ray structure of the adduct formed in the reaction between bovine pancreatic ribonuclease and compound I, a piano-stool organometallic Ru(II) arene compound containing an O,S-chelating ligand

Ferraro, G., Merlino, A.

(2016) Dalton Trans 45: 12283-12287

Released	2016-08-03
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease pancreatic (protein)
Unique Ligands	6L6, DMS, RU

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5KJ9	Download File View File

Anticancer activity of Ru- and Os(arene) compounds of a maleimide-functionalized bioactive pyridinecarbothioamide ligand

Sullivan, M.P., Christian, C.G., Goldstone, D.C.

(2016) J Inorg Biochem 165: 100-107

Released	2016-07-06
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	NA, RU

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5L8D	Download File View File

X-ray structure of NikA from Escherichia coli in complex with Ru(bis(pyrzol-1-yl)acetate scorpionate)(CO)2Cl

Menage, S., Cavazza, C.

(2017) Chem Commun (Camb) 53: 3579-3582

Released	2017-03-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	6RP, ACT, CL, CMO, EDT, FE, GOL, RU, SO4

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5LVG	Download File View File

Hen Egg White Lysozyme co-crystallized with cis-Ru(DMSO)4Cl2

Kurpiewska, K., Halajko, P., Lewinski, K.

To be published

Released	2016-09-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	ACT, CL, NA, RU

1 to 25 of 52 Structures

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