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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = UGA

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This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Homo sapiens (5)
	Burkholderia cepacia (3)
	Bacillus cereus HuA2-4 (2)
	Escherichia coli (2)
	Arabidopsis thaliana (1)
	Klebsiella pneumoniae (1)
	Lama glama (1)
	Paramecium bursaria Chlorella virus CZ-2 (1)
	Porphyromonas gingivalis (1)
	Salmonella enterica subsp. enterica serovar Typhimurium (1)

More...

Taxonomy

	Bacteria (12)
	Eukaryota (7)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (4)
	2.5 - 3.0 (4)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (4)
	2010 - 2014 (5)
	2015 - 2019 (2)
	2020 - 2024 (6)

Enzyme Classification Name

	Oxidoreductases (11)
	Transferases (6)
	Lyases (2)

Membrane Protein Annotation

PDBTM (1)

Symmetry Type

	Cyclic (13)
	Dihedral (6)
	Asymmetric (1)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	All beta proteins (1)
	Artifacts (1)
	All alpha proteins (1)

AllSelected

1 to 19 of 19 Structures

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1DLJ \| pdb_00001dlj	Download File View File

THE FIRST STRUCTURE OF UDP-GLUCOSE DEHYDROGENASE (UDPGDH) REVEALS THE CATALYTIC RESIDUES NECESSARY FOR THE TWO-FOLD OXIDATION

Campbell, R.E., Mosimann, S.C., van de Rijn, I., Tanner, M.E., Strynadka, N.C.J.

(2000) Biochemistry 39: 7012-7023

Released	2000-05-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus pyogenes
Macromolecule	UDP-GLUCOSE DEHYDROGENASE (protein)
Unique Ligands	GOL, NAI, SO4, UGA

Explore in 3D

1KWS \| pdb_00001kws	Download File View File

CRYSTAL STRUCTURE OF BETA1,3-GLUCURONYLTRANSFERASE I IN COMPLEX WITH THE ACTIVE UDP-GLCUA DONOR

Pedersen, L.C., Darden, T.A., Negishi, M.

(2002) J Biological Chem 277: 21869-21873

Released	2002-06-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	BETA-1,3-GLUCURONYLTRANSFERASE 3 (protein)
Unique Ligands	MN, UGA

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1Z7E \| pdb_00001z7e	Download File View File

Crystal structure of full length ArnA

Gatzeva-Topalova, P.Z., May, A.P., Sousa, M.C.

(2005) Structure 13: 929-942

Released	2005-06-07
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	protein ArnA (protein)
Unique Ligands	ATP, UGA

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2QG4 \| pdb_00002qg4	Download File View File

Crystal structure of human UDP-glucose dehydrogenase product complex with UDP-glucuronate

Kavanagh, K.L., Guo, K., Bunkoczi, G., Savitsky, P., Pilka, E., Bhatia, C., Niesen, F., Smee, C., Berridge, G., von Delft, F., Weigelt, J., Arrowsmith, C.H., Sundstrom, M., Edwards, A., Oppermann, U., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 23877-23887

Released	2007-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	UDP-glucose 6-dehydrogenase (protein)
Unique Ligands	CL, EDO, NAD, UGA

Explore in 3D

2Y0C \| pdb_00002y0c	Download File View File

BceC mutation Y10S

Rocha, J., Popescu, A.O., Borges, P., Mil-Homens, D., Sa-Correia, I., Fialho, A.M., Frazao, C.

(2011) J Bacteriol 193: 3978

Released	2011-07-27
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Burkholderia cepacia
Macromolecule	UDP-GLUCOSE DEHYDROGENASE (protein)
Unique Ligands	ACT, GOL, SO4, TRS, UGA

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2Y0D \| pdb_00002y0d	Download File View File

BceC mutation Y10K

Rocha, J., Popescu, A.O., Borges, P., Mil-Homens, D., Sa-Correia, I., Fialho, A.M., Frazao, C.

(2011) J Bacteriol 193: 3978

Released	2011-07-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Burkholderia cepacia
Macromolecule	UDP-GLUCOSE DEHYDROGENASE (protein)
Unique Ligands	SO4, UGA

Explore in 3D

2Y0E \| pdb_00002y0e	Download File View File

BceC and the final step of UGDs reaction

Rocha, J., Popescu, A.O., Borges, P., Mil-Homens, D., Sa-Correia, I., Fialho, A.M., Frazao, C.

(2011) J Bacteriol 193: 3978

Released	2011-07-27
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Burkholderia cepacia
Macromolecule	UDP-GLUCOSE DEHYDROGENASE (protein)
Unique Ligands	ACT, GOL, SO4, UGA

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2Z86 \| pdb_00002z86	Download File View File

Crystal structure of chondroitin polymerase from Escherichia coli strain K4 (K4CP) complexed with UDP-GlcUA and UDP

Osawa, T., Sugiura, N., Shimada, H., Hirooka, R., Tsuji, A., Kimura, M., Kimata, K., Kakuta, Y.

(2009) Biochem Biophys Res Commun 378: 10-14

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Chondroitin synthase (protein)
Unique Ligands	MN, UDP, UGA

Explore in 3D

3GG2 \| pdb_00003gg2	Download File View File

Crystal structure of UDP-glucose 6-dehydrogenase from Porphyromonas gingivalis bound to product UDP-glucuronate

Bonanno, J.B., Freeman, J., Bain, K.T., Chang, S., Sampathkumar, P., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family (protein)
Unique Ligands	UGA

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3PJG \| pdb_00003pjg	Download File View File

Crystal structure of UDP-glucose dehydrogenase from Klebsiella pneumoniae complexed with product UDP-glucuronic acid

Chen, Y.-Y., Ko, T.-P., Lin, C.-H., Chen, W.-H., Wang, A.H.-J.

(2011) J Struct Biol 175: 300-310

Released	2011-09-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Klebsiella pneumoniae
Macromolecule	UDP-glucose 6-dehydrogenase (protein)
Unique Ligands	CXS, UGA

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4LK3 \| pdb_00004lk3	Download File View File

Crystal structure of Human UDP-xylose synthase R236A substitution

Walsh Jr., R.M., Polizzi, S.J., Wood, Z.A.

(2015) Biochemistry 54: 807-819

Released	2013-08-07
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens
Macromolecule	UDP-glucuronic acid decarboxylase 1 (protein)
Unique Ligands	NAD, POP, SO4, UDP, UGA

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6H0P \| pdb_00006h0p	Download File View File

The structure of C100A mutant of Arabidopsis thaliana UDP-apiose/UDP-xylose synthase in complex with NADH and UDP-D-glucuronic acid

Savino, S., Mattevi, A.

(2019) Nat Catal 2: 1115-1123

Released	2019-10-23
Method	X-RAY DIFFRACTION 3.47 Å
Organisms	Arabidopsis thaliana
Macromolecule	UDP-D-apiose/UDP-D-xylose synthase 1 (protein)
Unique Ligands	NAD, UGA

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6KV9 \| pdb_00006kv9	Download File View File

MoeE5 in complex with UDP-glucuronic acid and NAD

Ko, T.-P., Liu, W., Sun, H., Liu, W., Chen, C.-C., Guo, R.-T.

(2020) Biochem Biophys Res Commun 521: 31-36

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Streptomyces viridosporus ATCC 14672
Macromolecule	MoeE5 (protein)
Unique Ligands	NAD, UGA

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6TES \| pdb_00006tes	Download File View File

Crystal Structure of full-length Human Lysyl Hydroxylase LH3 - Cocrystal with Fe2+, Mn2+, UDP-Glucuronic Acid

Chiapparino, A., De Giorgi, F., Scietti, L., Faravelli, S., Roscioli, T., Forneris, F.

(2023) Int J Mol Sci

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 (protein)
Unique Ligands	AKG, EDO, FE2, MN, NAG, UGA
Unique branched monosaccharides	NAG

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6TEZ \| pdb_00006tez	Download File View File

Crystal Structure of full-length Human Lysyl Hydroxylase LH3 - Val80Lys mutant - Cocrystal with Fe2+, Mn2+, UDP-Glucuronic Acid

Chiapparino, A., De Giorgi, F., Scietti, L., Faravelli, S., Roscioli, T., Forneris, F.

(2023) Int J Mol Sci

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 (protein)
Unique Ligands	AKG, FE2, GOL, MN, NAG, UGA
Unique branched monosaccharides	NAG

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6ZLD \| pdb_00006zld	Download File View File

Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Glucuronic acid and NAD

Iacovino, L.G., Savino, S., Mattevi, A.

(2020) J Biological Chem 295: 12461-12473

Released	2020-07-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus cereus HuA2-4
Macromolecule	Epimerase domain-containing protein (protein)
Unique Ligands	NAD, UGA

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6ZLK \| pdb_00006zlk	Download File View File

Equilibrium Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Glucuronic acid/UDP-Galacturonic acid and NAD

Iacovino, L.G., Mattevi, A.

(2020) J Biological Chem 295: 12461-12473

Released	2020-07-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus cereus HuA2-4
Macromolecule	Epimerase domain-containing protein (protein)
Unique Ligands	NAD, UGA, UGB

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8GJH \| pdb_00008gjh	Download File View File

Salmonella ArnA

Sousa, M.C., Mitchell, M.E., Gatzeva-Topalova, P.Z.

(2023) Biochemistry 62: 2216-2227

Released	2023-08-02
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Bifunctional polymyxin resistance protein ArnA (protein)
Unique Ligands	UGA

Explore in 3D

8SND \| pdb_00008snd	Download File View File

Chlorella virus Hyaluronan Synthase bound to GlcNAc primer and UDP-GlcA

Stephens, Z., Zimmer, J.

(2025) Nat Struct Mol Biol 32: 161-171

Released	2024-05-01
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Lama glama Paramecium bursaria Chlorella virus CZ-2
Macromolecule	Hyaluronan synthase (protein) Nanobody 872 (protein) Nanobody 881 (protein)
Unique Ligands	3PE, MN, NAG, UGA, Y01

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DLJ | pdb_00001dlj

THE FIRST STRUCTURE OF UDP-GLUCOSE DEHYDROGENASE (UDPGDH) REVEALS THE CATALYTIC RESIDUES NECESSARY FOR THE TWO-FOLD OXIDATION

1KWS | pdb_00001kws

CRYSTAL STRUCTURE OF BETA1,3-GLUCURONYLTRANSFERASE I IN COMPLEX WITH THE ACTIVE UDP-GLCUA DONOR

1Z7E | pdb_00001z7e

Crystal structure of full length ArnA

2QG4 | pdb_00002qg4

Crystal structure of human UDP-glucose dehydrogenase product complex with UDP-glucuronate

2Y0C | pdb_00002y0c

BceC mutation Y10S

2Y0D | pdb_00002y0d

BceC mutation Y10K

2Y0E | pdb_00002y0e

BceC and the final step of UGDs reaction

2Z86 | pdb_00002z86

Crystal structure of chondroitin polymerase from Escherichia coli strain K4 (K4CP) complexed with UDP-GlcUA and UDP

3GG2 | pdb_00003gg2

Crystal structure of UDP-glucose 6-dehydrogenase from Porphyromonas gingivalis bound to product UDP-glucuronate

3PJG | pdb_00003pjg

Crystal structure of UDP-glucose dehydrogenase from Klebsiella pneumoniae complexed with product UDP-glucuronic acid

4LK3 | pdb_00004lk3

Crystal structure of Human UDP-xylose synthase R236A substitution

6H0P | pdb_00006h0p

The structure of C100A mutant of Arabidopsis thaliana UDP-apiose/UDP-xylose synthase in complex with NADH and UDP-D-glucuronic acid

6KV9 | pdb_00006kv9

MoeE5 in complex with UDP-glucuronic acid and NAD

6TES | pdb_00006tes

Crystal Structure of full-length Human Lysyl Hydroxylase LH3 - Cocrystal with Fe2+, Mn2+, UDP-Glucuronic Acid

6TEZ | pdb_00006tez

Crystal Structure of full-length Human Lysyl Hydroxylase LH3 - Val80Lys mutant - Cocrystal with Fe2+, Mn2+, UDP-Glucuronic Acid

6ZLD | pdb_00006zld

Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Glucuronic acid and NAD

6ZLK | pdb_00006zlk

Equilibrium Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Glucuronic acid/UDP-Galacturonic acid and NAD

8GJH | pdb_00008gjh

Salmonella ArnA

8SND | pdb_00008snd

Chlorella virus Hyaluronan Synthase bound to GlcNAc primer and UDP-GlcA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DLJ | pdb_00001dlj

1KWS | pdb_00001kws

1Z7E | pdb_00001z7e

2QG4 | pdb_00002qg4

2Y0C | pdb_00002y0c

2Y0D | pdb_00002y0d

2Y0E | pdb_00002y0e

2Z86 | pdb_00002z86

3GG2 | pdb_00003gg2

3PJG | pdb_00003pjg

4LK3 | pdb_00004lk3

6H0P | pdb_00006h0p

6KV9 | pdb_00006kv9

6TES | pdb_00006tes

6TEZ | pdb_00006tez

6ZLD | pdb_00006zld

6ZLK | pdb_00006zlk

8GJH | pdb_00008gjh

8SND | pdb_00008snd