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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = XYP

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Cellvibrio japonicus (9)
	Bacillus subtilis (7)
	Acetivibrio thermocellus (5)
	Piromyces sp. 'equi (3)
	Streptomyces lividans (3)
	Streptococcus pyogenes (1)
	Streptomyces coelicolor A3(2) (1)

Taxonomy

	Bacteria (26)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (29)

Polymer Entity Type

Protein (29)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (16)
	2.0 - 2.5 (8)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (27)
	2005 - 2009 (1)
	2010 - 2014 (1)

Enzyme Classification Name

	Hydrolases (16)
	Lyases (4)

Symmetry Type

	Asymmetric (25)
	Dihedral (2)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	All beta proteins (13)
	Artifacts (6)
	All alpha proteins (3)

AllSelected

1 to 25 of 29 Structures

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1DYO	Download File View File

Xylan-Binding Domain from CBM 22, formally x6b domain

Davies, G.J., Charnock, S.J., Gilbert, H.J., Fontes, C.M.G.A.

(2000) Biochemistry 39: 5013

Released	2000-07-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CA

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1E0V	Download File View File

Xylanase 10A from Sreptomyces lividans. cellobiosyl-enzyme intermediate at 1.7 A

Ducros, V., Charnock, S.J., Derewenda, U., Derewenda, Z.S., Dauter, Z., Dupont, C., Shareck, F., Morosoli, R., Kluepfel, D., Davies, G.J.

(2000) J Biol Chem 275: 23020

Released	2001-04-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces lividans
Macromolecule	ENDO-1,4-BETA-XYLANASE A (protein)
Unique branched monosaccharides	BGC, G2F

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1E0W	Download File View File

Xylanase 10A from Sreptomyces lividans. native structure at 1.2 angstrom resolution

Ducros, V., Charnock, S.J., Derewenda, U., Derewenda, Z.S., Dauter, Z., Dupont, C., Shareck, F., Morosoli, R., Kluepfel, D., Davies, G.J.

(2000) J Biol Chem 275: 23020

Released	2001-04-05
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Streptomyces lividans
Macromolecule	ENDO-1,4-BETA-XYLANASE A (protein)

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1E0X	Download File View File

XYLANASE 10A FROM SREPTOMYCES LIVIDANS. XYLOBIOSYL-ENZYME INTERMEDIATE AT 1.65 A

Ducros, V., Charnock, S.J., Derewenda, U., Derewenda, Z.S., Dauter, Z., Dupont, C., Shareck, F., Morosoli, R., Kluepfel, D., Davies, G.J.

(2000) J Biol Chem 275: 23020

Released	2001-04-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptomyces lividans
Macromolecule	ENDO-1,4-BETA-XYLANASE A (protein)
Unique Ligands	GOL
Unique branched monosaccharides	X2F, XYP

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1GKK	Download File View File

Feruloyl esterase domain of XynY from clostridium thermocellum

Prates, J.A.M., Tarbouriech, N., Charnock, S.J., Fontes, C.M.G.A., Ferreira, L.M.A., Davies, G.J.

(2001) Structure 9: 1183

Released	2001-12-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CD, GOL

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1GKL	Download File View File

S954A mutant of the feruloyl esterase module from clostridium thermocellum complexed with ferulic acid

Prates, J.A.M., Tarbouriech, N., Charnock, S.J., Fontes, C.M.G.A., Ferreira, L.M.A., Davies, G.J.

(2001) Structure 9: 1183-1190

Released	2001-12-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	ACT, CD, FER, GOL

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1GNY	Download File View File

xylan-binding module CBM15

Szabo, S., Jamal, S., Xie, H., Charnock, S.J., Bolam, D.N., Gilbert, H.J., Davies, G.J.

(2001) J Biol Chem 276: 49061

Released	2001-11-29
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Cellvibrio japonicus
Macromolecule	XYLANASE 10C (protein)
Unique Ligands	NA
Unique branched monosaccharides	XYP

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1GWK	Download File View File

Carbohydrate binding module family29

Charnock, S.J., Nurizzo, D., Davies, G.J.

(2002) Proc Natl Acad Sci U S A 99: 14077

Released	2003-03-20
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Piromyces sp. 'equi
Macromolecule	NON-CATALYTIC PROTEIN 1 (protein)

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1GWL	Download File View File

Carbohydrate binding module family29 complexed with mannohexaose

Charnock, S.J., Nurizzo, D., Davies, G.J.

(2002) Proc Natl Acad Sci U S A 99: 14077

Released	2003-03-20
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Piromyces sp. 'equi
Macromolecule	NON-CATALYTIC PROTEIN 1 (protein)
Unique branched monosaccharides	BMA

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1GWM	Download File View File

Carbohydrate binding module family29 complexed with glucohexaose

Charnock, S.J., Nurizzo, D., Davies, G.J.

(2002) Proc Natl Acad Sci U S A 99: 14077

Released	2003-03-20
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Piromyces sp. 'equi
Macromolecule	NON-CATALYTIC PROTEIN 1 (protein)
Unique Ligands	CO, EDO
Unique branched monosaccharides	BGC, GLC

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1GXM	Download File View File

Family 10 polysaccharide lyase from Cellvibrio cellulosa

Charnock, S.J., Brown, I.E., Turkenburg, J.P., Black, G.W., Davies, G.J.

(2002) Proc Natl Acad Sci U S A 99: 12067

Released	2002-10-04
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Cellvibrio japonicus
Macromolecule	PECTATE LYASE (protein)
Unique Ligands	GOL

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1GXN	Download File View File

Family 10 polysaccharide lyase from Cellvibrio cellulosa

Charnock, S.J., Brown, I.E., Turkenburg, J.P., Black, G.W., Davies, G.J.

(2002) Proc Natl Acad Sci U S A 99: 12067

Released	2002-10-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cellvibrio japonicus
Macromolecule	PECTATE LYASE (protein)

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1GXO	Download File View File

Mutant D189A of Family 10 polysaccharide lyase from Cellvibrio cellulosa in complex with trigalaturonic acid

Charnock, S.J., Brown, I.E., Turkenburg, J.P., Black, G.W., Davies, G.J.

(2002) Proc Natl Acad Sci U S A 99: 12067

Released	2002-10-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Cellvibrio japonicus
Macromolecule	PECTATE LYASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	ADA

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1GYD	Download File View File

Structure of Cellvibrio cellulosa alpha-L-arabinanase

Nurizzo, D., Turkenburg, J.P., Charnock, S.J., Roberts, S.M., Dodson, E.J., McKie, V.A., Taylor, E.J., Gilbert, H.J., Davies, G.J.

(2002) Nat Struct Biol 9: 665-668

Released	2002-08-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Cellvibrio japonicus
Macromolecule	ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A (protein)

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1GYE	Download File View File

Structure of Cellvibrio cellulosa alpha-L-arabinanase complexed with Arabinohexaose

Nurizzo, D., Turkenburg, J.P., Charnock, S.J., Roberts, S.M., Dodson, E.J., McKie, V.A., Taylor, E.J., Gilbert, H.J., Davies, G.J.

(2002) Nat Struct Biol 9: 665-668

Released	2002-08-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cellvibrio japonicus
Macromolecule	ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A (protein)
Unique Ligands	CL
Unique branched monosaccharides	AHR

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1GYH	Download File View File

Structure of D158A Cellvibrio cellulosa alpha-L-arabinanase mutant

Nurizzo, D., Turkenburg, J.P., Charnock, S.J., Roberts, S.M., Dodson, E.J., McKie, V.A., Taylor, E.J., Gilbert, H.J., Davies, G.J.

(2002) Nat Struct Biol 9: 665

Released	2002-08-23
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Cellvibrio japonicus
Macromolecule	ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A (protein)
Unique Ligands	CL

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1H6X	Download File View File

The role of conserved amino acids in the cleft of the C-terminal family 22 carbohydrate binding module of Clostridium thermocellum Xyn10B in ligand binding

Xie, H., Bolam, D.N., Charnock, S.J., Davies, G.J., Williamson, M.P., Simpson, P.J., Fontes, C.M.G.A., Ferreira, L.M.A., Gilbert, H.J.

(2001) Biochemistry 40: 9167

Released	2002-06-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CA

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1H6Y	Download File View File

The role of conserved amino acids in the cleft of the C-terminal family 22 carbohydrate binding module of Clostridium thermocellum Xyn10B in ligand binding

Xie, H., Bolam, D.N., Charnock, S.J., Davies, G.J., Williamson, M.P., Simpson, P.J., Fontes, C.M.G.A., Ferreira, L.M.A., Gilbert, H.J.

(2001) Biochemistry 40: 9167

Released	2002-06-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CA

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1H7L	Download File View File

dTDP-MAGNESIUM COMPLEX OF SPSA FROM BACILLUS SUBTILIS

Tarbouriech, N., Charnock, S.J., Davies, G.J.

(2001) J Mol Biol 314: 655

Released	2001-12-13
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Bacillus subtilis
Macromolecule	SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSA (protein)
Unique Ligands	MG, TYD

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1H7Q	Download File View File

dTDP-MANGANESE COMPLEX OF SPSA FROM BACILLUS SUBTILIS

Tarbouriech, N., Charnock, S.J., Davies, G.J.

(2001) J Mol Biol 314: 655

Released	2001-12-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSA (protein)
Unique Ligands	MG, MN, TYD

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1ODS	Download File View File

Cephalosporin C deacetylase from Bacillus subtilis

Vincent, F., Charnock, S.J., Verschueren, K.H.G., Turkenburg, J.P., Scott, D.J., Offen, W.A., Roberts, S., Pell, G., Gilbert, H.J., Brannigan, J.A., Davies, G.J.

(2003) J Mol Biol 330: 593

Released	2003-07-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	CEPHALOSPORIN C DEACETYLASE (protein)
Unique Ligands	CL, MG

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1ODT	Download File View File

cephalosporin C deacetylase mutated, in complex with acetate

Vincent, F., Charnock, S.J., Verschueren, K.H.G., Turkenburg, J.P., Scott, D.J., Offen, W.A., Roberts, S., Pell, G., Gilbert, H.J., Brannigan, J.A., Davies, G.J.

(2003) J Mol Biol 330: 593

Released	2003-07-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus subtilis
Macromolecule	CEPHALOSPORIN C DEACETYLASE (protein)
Unique Ligands	ACT

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1QG8	Download File View File

NATIVE (MAGNESIUM-CONTAINING) SPSA FROM BACILLUS SUBTILIS

Charnock, S.J.

(1999) Biochemistry 38: 6380-6385

Released	2000-04-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSA) (protein)
Unique Ligands	GOL, MG

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1QGQ	Download File View File

UDP-MANGANESE COMPLEX OF SPSA FROM BACILLUS SUBTILIS

Charnock, S.J.

(1999) Biochemistry 38: 6380-6385

Released	2000-05-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSA) (protein)
Unique Ligands	GOL, MG, MN, UDP

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1QGS	Download File View File

UDP-MAGNESIUM COMPLEX OF SPSA FROM BACILLUS SUBTILIS

Charnock, S.J.

(1999) Biochemistry 38: 6380-6385

Released	2000-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSA) (protein)
Unique Ligands	GOL, MG, UDP