RCSB PDB: Search

1WKO \| pdb_00001wko	Download File View File

Terminal flower 1 (tfl1) from arabidopsis thaliana

Miller, D., Banfield, M.J., Winter, V.J., Brady, R.L.

(2006) EMBO J 25: 605-614

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	TERMINAL FLOWER 1 protein (protein)

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1WKP \| pdb_00001wkp	Download File View File

Flowering locus t (ft) from arabidopsis thaliana

Miller, D., Banfield, M.J., Winter, V.J., Brady, R.L.

(2006) EMBO J 25: 605-614

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	FLOWERING LOCUS T protein (protein)
Unique Ligands	SO4

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2LK4 \| pdb_00002lk4	Download File View File

Structural and mechanistic insights into the interaction between PAT Pyk2 and Paxillin LD motif

Vanarotti, M., Miller, D., Guibao, C., Zheng, J.

(2014) J Mol Biology 426: 3985-4001

Released	2012-10-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein-tyrosine kinase 2-beta (protein)

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3DO7 \| pdb_00003do7	Download File View File

X-ray structure of a NF-kB p52/RelB/DNA complex

Fusco, A., Huang, D.B., Miller, D., Vu, D., Ghosh, G.

To be published

Released	2009-07-21
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Avian reticuloendotheliosis viral (V-rel) oncogene related B (protein) Nuclear factor NF-kappa-B p100 subunit (protein) 5'-D(DCPDGPDGPDGPDAPDAPDTPDTPDCPDCP*DC)-3' (nucleic acid)

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3H5A \| pdb_00003h5a	Download File View File

Crystal structure of E. coli MccB

Regni, C.A., Roush, R.F., Miller, D., Nourse, A., Walsh, C.T., Schulman, B.A.

(2009) EMBO J 28: 1953-1964

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	MccB protein (protein)
Unique Ligands	ZN

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3H5N \| pdb_00003h5n	Download File View File

Crystal structure of E. coli MccB + ATP

Regni, C.A., Roush, R.F., Miller, D., Nourse, A., Walsh, C.T., Schulman, B.A.

(2009) EMBO J 28: 1953-1964

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	MccB protein (protein)
Unique Ligands	ATP, MG, SO4, ZN

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3H5R \| pdb_00003h5r	Download File View File

Crystal structure of E. coli MccB + Succinimide

Regni, C.A., Roush, R.F., Miller, D., Nourse, A., Walsh, C.T., Schulman, B.A.

(2009) EMBO J 28: 1953-1964

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	MccB protein (protein) Microcin C7 analog (protein)
Unique Ligands	SO4, ZN

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3H9G \| pdb_00003h9g	Download File View File

Crystal structure of E. coli MccB + MccA-N7isoASN

Regni, C.A., Roush, R.F., Miller, D., Nourse, A., Walsh, C.T., Schulman, B.A.

(2009) EMBO J 28: 1953-1964

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	MccB protein (protein) Microcin C7 analog (protein)
Unique Ligands	SO4, ZN

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3H9J \| pdb_00003h9j	Download File View File

Crystal structure of E. coli MccB + AMPCPP + SeMeT MccA

Regni, C.A., Roush, R.F., Miller, D., Nourse, A., Walsh, C.T., Schulman, B.A.

(2009) EMBO J 28: 1953-1964

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	MccB protein (protein) Microcin C7 ANALOG (protein)
Unique Ligands	APC, SO4, ZN

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3H9Q \| pdb_00003h9q	Download File View File

Crystal structure of E. coli MccB + SeMet MccA

Regni, C.A., Roush, R.F., Miller, D., Nourse, A., Walsh, C.T., Schulman, B.A.

(2009) EMBO J 28: 1953-1964

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Escherichia coli
Macromolecule	MccB protein (protein) Microcin C7 ANALOG (protein)
Unique Ligands	SO4, ZN

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3HSV \| pdb_00003hsv	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx-MacroH2ASBCpep2

Zhuang, M., Schulman, B.A., Miller, D.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	Core histone macro-H2A.1 (protein) Speckle-type POZ protein (protein)
Unique Ligands	SO4, ZN

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3QRI \| pdb_00003qri	Download File View File

The crystal structure of human abl1 kinase domain in complex with DCC-2036

Chan, W.W., Wise, S.C., Kaufman, M.D., Ahn, Y.M., Ensinger, C.L., Haack, T., Hood, M.M., Jones, J., Lord, J.W., Lu, W.P., Miller, D., Patt, W.C., Smith, B.D., Petillo, P.A., Rutkoski, T.J., Telikepalli, H., Vogeti, L., Yao, T., Chun, L., Clark, R., Evangelista, P., Gavrilescu, L.C., Lazarides, K., Zaleskas, V.M., Stewart, L.J., Van Etten, R.A., Flynn, D.L.

(2011) Cancer Cell 19: 556-568

Released	2011-06-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	919, NA

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3QRJ \| pdb_00003qrj	Download File View File

The crystal structure of human abl1 kinase domain T315I mutant in complex with DCC-2036

Chan, W.W., Wise, S.C., Kaufman, M.D., Ahn, Y.M., Ensinger, C.L., Haack, T., Hood, M.M., Jones, J., Lord, J.W., Lu, W.P., Miller, D., Patt, W.C., Smith, B.D., Petillo, P.A., Rutkoski, T.J., Telikepalli, H., Vogeti, L., Yao, T., Chun, L., Clark, R., Evangelista, P., Gavrilescu, L.C., Lazarides, K., Zaleskas, V.M., Stewart, L.J., Van Etten, R.A., Flynn, D.L.

(2011) Cancer Cell 19: 556-568

Released	2011-06-01
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	919

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3QRK \| pdb_00003qrk	Download File View File

The crystal structure of human abl1 kinase domain in complex with DP-987

Chan, W.W., Wise, S.C., Kaufman, M.D., Ahn, Y.M., Ensinger, C.L., Haack, T., Hood, M.M., Jones, J., Lord, J.W., Lu, W.P., Miller, D., Patt, W.C., Smith, B.D., Petillo, P.A., Rutkoski, T.J., Telikepalli, H., Vogeti, L., Yao, T., Chun, L., Clark, R., Evangelista, P., Gavrilescu, L.C., Lazarides, K., Zaleskas, V.M., Stewart, L.J., Van Etten, R.A., Flynn, D.L.

(2011) Cancer Cell 19: 556-568

Released	2011-06-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	9DP

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4LCD \| pdb_00004lcd	Download File View File

Structure of an Rsp5xUbxSna3 complex: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3

Kamadurai, H.B., Miller, D., Schulman, B.A.

(2013) Elife 2: e00828-e00828

Released	2013-08-14
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	E3 ubiquitin-protein ligase RSP5 (protein) Protein SNA3 (protein) Ubiquitin (protein)

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5C0K \| pdb_00005c0k	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 3

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4WK, EDO, ZN

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5C0L \| pdb_00005c0l	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 2

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4WJ, ZN

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5C3H \| pdb_00005c3h	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 1

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4XE, ZN

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5C3K \| pdb_00005c3k	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 4

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4XF, ZN

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5C7A \| pdb_00005c7a	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 7

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4YE, ZN

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5C7B \| pdb_00005c7b	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 5

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4YD, ZN

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5C7C \| pdb_00005c7c	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 18

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4YC, ZN

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5C7D \| pdb_00005c7d	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 17

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4YF, ZN

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5C83 \| pdb_00005c83	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 21

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4YN, ZN

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5C84 \| pdb_00005c84	Download File View File

Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 20

Chessari, G., Buck, I.M., Day, J.E.H., Day, P.J., Iqbal, A., Johnson, C.N., Lewis, E.J., Martins, V., Miller, D., Reader, M., Rees, D.C., Rich, S.J., Tamanini, E., Vitorino, M., Ward, G.A., Williams, P.A., Williams, G., Wilsher, N.E., Woolford, A.J.-A.

(2015) J Med Chem 58: 6574-6588

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	4YL, ZN

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1WKO | pdb_00001wko

1WKP | pdb_00001wkp

2LK4 | pdb_00002lk4

3DO7 | pdb_00003do7

3H5A | pdb_00003h5a

3H5N | pdb_00003h5n

3H5R | pdb_00003h5r

3H9G | pdb_00003h9g

3H9J | pdb_00003h9j

3H9Q | pdb_00003h9q

3HSV | pdb_00003hsv

3QRI | pdb_00003qri

3QRJ | pdb_00003qrj

3QRK | pdb_00003qrk

4LCD | pdb_00004lcd

5C0K | pdb_00005c0k

5C0L | pdb_00005c0l

5C3H | pdb_00005c3h

5C3K | pdb_00005c3k

5C7A | pdb_00005c7a

5C7B | pdb_00005c7b

5C7C | pdb_00005c7c

5C7D | pdb_00005c7d

5C83 | pdb_00005c83

5C84 | pdb_00005c84