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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Common Name (Entity Source Organism) = "Yeast"

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Search Summary

This query matches 1,107 Polymer Entities.

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Structure Determination Methodology

experimental (1,107)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (396)
	Saccharomyces cerevisiae S288C (138)
	Candida albicans SC5314 (103)
	Kluyveromyces lactis NRRL Y-1140 (70)
	Candida albicans (48)
	Kluyveromyces lactis (44)
	Nakaseomyces glabratus (41)
	Scheffersomyces stipitis CBS 6054 (37)
	Komagataella phaffii GS115 (25)
	Candida parapsilosis (20)

More...

Taxonomy

	Eukaryota (1,107)
	Archaea (2)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (925)
	ELECTRON MICROSCOPY (126)
	SOLUTION NMR (56)
	NEUTRON DIFFRACTION (2)

Polymer Entity Type

	Protein (1,098)
	RNA (8)
	DNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (9)
	1.0 - 1.5 (64)
	1.5 - 2.0 (237)
	2.0 - 2.5 (270)
	2.5 - 3.0 (208)
	3.0 - 3.5 (109)
	3.5 - 4.0 (73)
	4.0 - 4.5 (30)
	> 4.5 (51)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (122)
	2010 - 2014 (521)
	2015 - 2019 (367)
	2020 - 2024 (91)

Enzyme Classification Name

	Hydrolases (160)
	Transferases (155)
	Oxidoreductases (145)
	Lyases (23)
	Ligases (22)
	Isomerases (17)
	Translocases (3)

Membrane Protein Annotation

	OPM (19)
	PDBTM (14)
	MemProtMD (11)
	mpstruc (9)

Symmetry Type

	Asymmetric (771)
	Cyclic (336)
	Dihedral (74)
	Tetrahedral (2)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a/b) (172)
	Artifacts (70)
	All alpha proteins (59)
	All beta proteins (39)
	Alpha and beta proteins (a+b) (56)
	Coiled coil proteins (4)
	Multi-domain proteins (alpha and beta) (4)
	Small proteins (5)
	Low resolution protein structures (2)

AllSelected

1 to 25 of 1,107 Polymer Entities

Page 1 of 45

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1G6I: Entity 1	Download File View File

Crystal structure of the yeast alpha-1,2-mannosidase with bound 1-deoxymannojirimycin at 1.59 A resolution

Herscovics, A., Lipari, F., Sleno, B., Romera, P.A., Vallee, F., Yip, P., Howell, P.A.

(2002) Carbohydrate Bioengineering Interdisciplinary Approaches 28-33

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.59 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CLASS I ALPHA-1,2-MANNOSIDASE

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1GYR: Entity 1	Download File View File

Mutant form of enoyl thioester reductase from Candida tropicalis

Airenne, T.T., Torkko, J.M., Van Der Plas, S., Sormunen, R.T., Kastaniotis, A.J., Wierenga, R.K., Hiltunen, J.K.

(2003) J Mol Biol 327: 47

Released	2003-03-13
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	A, B, C
Organism	Candida tropicalis
Macromolecule	2,4-DIENOYL-COA REDUCTASE

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1H0K: Entity 1	Download File View File

Enoyl thioester reductase 2

Airenne, T.T., Torkko, J.M., Hiltunen, J.K.

To be published

Released	2003-06-26
Method	X-RAY DIFFRACTION 2.11 Å
Chain IDs	A, B
Organism	Candida tropicalis
Macromolecule	2,4-DIENOYL-COA REDUCTASE

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1HBW: Entity 1	Download File View File

Solution nmr structure of the dimerization domain of the yeast transcriptional activator Gal4 (residues 50-106)

Hidalgo, P., Ansari, A.Z., Schmidt, P., Hare, B., Simkovic, N., Farrell, S., Shin, E.J., Ptashne, M., Wagner, G.

(2001) Genes Dev 15: 1007

Released	2001-05-10
Method	SOLUTION NMR
Chain IDs	A, B
Organism	Saccharomyces cerevisiae
Macromolecule	REGULATORY PROTEIN GAL4

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1WCM: Entity 4	Download File View File

Complete 12-Subunit RNA Polymerase II at 3.8 Angstrom

Armache, K.-J., Mitterweger, S., Meinhart, A., Cramer, P.

(2005) J Biol Chem 280: 7131

Released	2004-12-14
Method	X-RAY DIFFRACTION 3.8 Å
Chain ID	D
Organism	Saccharomyces cerevisiae
Macromolecule	DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE

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1WCM: Entity 7	Download File View File

Complete 12-Subunit RNA Polymerase II at 3.8 Angstrom

Armache, K.-J., Mitterweger, S., Meinhart, A., Cramer, P.

(2005) J Biol Chem 280: 7131

Released	2004-12-14
Method	X-RAY DIFFRACTION 3.8 Å
Chain ID	G
Organism	Saccharomyces cerevisiae
Macromolecule	DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE

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2JQI: Entity 1	Download File View File

NMR Structure of the Rad53 FHA1 domain in complex with a phosphothreonien peptide derived from Rad53 SCD1

Yuan, C., Mahajan, A., Tsai, M.

(2008) Mol Cell 30: 767-778

Released	2008-06-24
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Serine/threonine-protein kinase RAD53

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2JQJ: Entity 1	Download File View File

NMR structure of yeast Dun1 FHA domain

Yuan, C., Lee, H., Chang, C., Heierhorst, J., Tsai, M.

(2008) Mol Cell 30: 767-778

Released	2008-06-24
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	DNA damage response protein kinase DUN1

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2JQL: Entity 1	Download File View File

NMR structure of the yeast Dun1 FHA domain in complex with a doubly phosphorylated (pT) peptide derived from Rad53 SCD1

Yuan, C., Lee, H., Chang, C., Heierhorst, J., Tsai, M.

(2008) Mol Cell 30: 767-778

Released	2008-06-24
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	DNA damage response protein kinase DUN1

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2JSS: Entity 1	Download File View File

NMR structure of chaperone Chz1 complexed with histone H2A.Z-H2B

Zhou, Z., Feng, H., Hansen, D.F., Kato, H., Luk, E., Freedberg, D.I., Kay, L.E., Wu, C., Bai, Y.

(2008) Nat Struct Mol Biol 15: 868-869

Released	2008-05-20
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Chimera of Histone H2B.1 and Histone H2A.Z

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2JTI: Entity 1	Download File View File

Solution structure of the yeast iso-1-cytochrome c (T12A) : yeast cytochrome c peroxidase complex

Ubbink, M., Volkov, A.N.

(2010) J Am Chem Soc 132: 11487-11495

Released	2008-07-22
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Cytochrome c peroxidase, mitochondrial

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2JTI: Entity 2	Download File View File

Solution structure of the yeast iso-1-cytochrome c (T12A) : yeast cytochrome c peroxidase complex

Ubbink, M., Volkov, A.N.

(2010) J Am Chem Soc 132: 11487-11495

Released	2008-07-22
Method	SOLUTION NMR
Chain ID	B
Organism	Saccharomyces cerevisiae
Macromolecule	Cytochrome c iso-1

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2K9P: Entity 1	Download File View File

Structure of TM1_TM2 in LPPG micelles

Neumoin, N., Zerbe, O., Naider, F.

(2009) Biophys J 96: 3187-3196

Released	2009-05-05
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Pheromone alpha factor receptor

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2KDI: Entity 1	Download File View File

Solution structure of a Ubiquitin/UIM fusion protein

Sgourakis, N.G., Patel, M.M., Garcia, A.E., Makhatadze, G.I., McCallum, S.A.

(2010) J Mol Biol 396: 1128-1144

Released	2010-02-09
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Ubiquitin, Vacuolar protein sorting-associated protein 27 fusion protein

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2KFJ: Entity 1	Download File View File

Solution structure of the loop deletion mutant of PB1 domain of Cdc24p

Ogura, K., Tandai, T., Yoshinaga, S., Kobashigawa, Y., Kumeta, H., Inagaki, F.

(2009) J Biochem 146: 317-325

Released	2009-10-06
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Cell division control protein 24

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2KFK: Entity 1	Download File View File

Solution structure of Bem1p PB1 domain complexed with Cdc24p PB1 domain

Kobashigawa, Y., Yoshinaga, S., Tandai, T., Ogura, K., Inagaki, F.

(2009) J Biochem 146: 317-325

Released	2009-10-06
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Bud emergence protein 1

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2KFK: Entity 2	Download File View File

Solution structure of Bem1p PB1 domain complexed with Cdc24p PB1 domain

Kobashigawa, Y., Yoshinaga, S., Tandai, T., Ogura, K., Inagaki, F.

(2009) J Biochem 146: 317-325

Released	2009-10-06
Method	SOLUTION NMR
Chain ID	B
Organism	Saccharomyces cerevisiae
Macromolecule	Cell division control protein 24

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2KH9: Entity 1	Download File View File

Solution structure of yeast Prp24-RRM2 bound to a fragment of U6 RNA

Martin-Tumasz, S.A., Butcher, S.E.

(2010) RNA 16: 792-804

Released	2010-03-09
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	U4/U6 snRNA-associated-splicing factor PRP24

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2KHH: Entity 1	Download File View File

Structural requirements for the UBA domain of the mRNA export factor Mex67 to bind its specific targets, the transcription elongation Tho complex component Hpr1 and nucleoporin FxFG repeats

Hobeika, M., Brockmann, C., Gruessing, F., Neuhaus, D., Divita, G., Stewart, M., Dargemont, C.

(2009) J Biol Chem 284: 17575-17583

Released	2009-05-12
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	mRNA export factor MEX67

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2KHH: Entity 2	Download File View File

Structural requirements for the UBA domain of the mRNA export factor Mex67 to bind its specific targets, the transcription elongation Tho complex component Hpr1 and nucleoporin FxFG repeats

Hobeika, M., Brockmann, C., Gruessing, F., Neuhaus, D., Divita, G., Stewart, M., Dargemont, C.

(2009) J Biol Chem 284: 17575-17583

Released	2009-05-12
Method	SOLUTION NMR
Chain ID	B
Organism	Saccharomyces cerevisiae
Macromolecule	FxFG

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2KIO: Entity 1	Download File View File

NMR structure of the oxidized yeast TOR1 FATC domain bound to DPC micelles at 318K

Dames, S.A.

(2010) J Biol Chem 285: 7766-7775

Released	2010-01-19
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Serine/threonine-protein kinase TOR1

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2KIT: Entity 1	Download File View File

The solution structure of the reduced yeast TOR1 FATC domain bound to DPC micelles at 298K

Dames, S.A.

(2010) J Biol Chem 285: 7766-7775

Released	2010-01-19
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Serine/threonine-protein kinase TOR1

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2KKM: Entity 1	Download File View File

Solution NMR structure of yeast protein YOR252W [residues 38-178]: Northeast Structural Genomics Consortium target YT654

Cort, J.R., Yee, A., Liu, C., Arrowsmith, C.H., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2009-10-06
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Translation machinery-associated protein 16

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2KM1: Entity 1	Download File View File

Solution structure of the N-terminal domain of the yeast protein Dre2

Craescu, C.T., Soler, N., Delagoutte, E., Baldacci, G., Vernis-Beringue, L.

(2012) FEBS J

Released	2010-08-11
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Protein DRE2

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2KM4: Entity 1	Download File View File

Solution structure of Rtt103 CTD interacting domain

Lunde, B.M., Reichow, S., Kim, M., Leeper, T.C., Becker, R., Buratowski, S., Meinhart, A., Varani, G.

(2010) Nat Struct Mol Biol 17: 1195-1201

Released	2010-09-08
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	Regulator of Ty1 transposition protein 103

1 to 25 of 1,107 Polymer Entities

Page 1 of 45

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