RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Common Name (Entity Source Organism) = "papaya"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 18 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

Carica papaya (18)

Taxonomy

Eukaryota (18)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (6)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	1975 - 1979 (5)
	1985 - 1989 (2)
	1990 - 1994 (7)
	1995 - 1999 (2)
	2005 - 2009 (1)
	2015 - 2019 (1)

Enzyme Classification Name

	Hydrolases (17)
	Transferases (1)

Symmetry Type

Asymmetric (18)

SCOP Classification

Alpha and beta proteins (a+b) (17)

AllSelected

1 to 18 of 18 Polymer Entities

Page 1 of 1

Sort by

Explore in 3D

1MEG: Entity 1	Download File View File

CRYSTAL STRUCTURE OF A CARICAIN D158E MUTANT IN COMPLEX WITH E-64

Katerelos, N.A.

(1996) FEBS Lett 392: 35-39

Released	1997-01-11
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	CARICAIN

Explore in 3D

1PAD: Entity 1	Download File View File

Binding of chloromethyl ketone substrate analogues to crystalline papain

Drenth, J., Kalk, K.H., Swen, H.M.

(1976) Biochemistry 15: 3731-3738

Released	1977-04-12
Method	X-RAY DIFFRACTION 2.8 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

1PCI: Entity 1	Download File View File

PROCARICAIN

Groves, M.R., Taylor, M.A.J., Scott, M., Cummings, N.J., Pickersgill, R.W., Jenkins, J.A.

(1996) Structure 4: 1193-1203

Released	1997-04-01
Method	X-RAY DIFFRACTION 3.2 Å
Chain IDs	A, B, C
Organism	Carica papaya
Macromolecule	PROCARICAIN

Explore in 3D

1PE6: Entity 1	Download File View File

REFINED X-RAY STRUCTURE OF PAPAIN(DOT)E-64-C COMPLEX AT 2.1-ANGSTROMS RESOLUTION

Yamamoto, D., Matsumoto, K., Ohishi, H., Ishida, T., Inoue, M., Kitamura, K., Mizuno, H.

(1991) J Biol Chem 266: 14771-14777

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

1PIP: Entity 1	Download File View File

CRYSTAL STRUCTURE OF PAPAIN-SUCCINYL-GLN-VAL-VAL-ALA-ALA-P-NITROANILIDE COMPLEX AT 1.7 ANGSTROMS RESOLUTION: NONCOVALENT BINDING MODE OF A COMMON SEQUENCE OF ENDOGENOUS THIOL PROTEASE INHIBITORS

Yamamoto, A., Tomoo, K., Doi, M., Ohishi, H., Inoue, M., Ishida, T., Yamamoto, D., Tsuboi, S., Okamoto, H., Okada, Y.

(1992) Biochemistry 31: 11305-11309

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	Papain

Explore in 3D

1POP: Entity 1	Download File View File

X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A PAPAIN-LEUPEPTIN COMPLEX

Schroder, E., Crawford, C.

(1993) FEBS Lett 315: 38-42

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

1PPD: Entity 1	Download File View File

RESTRAINED LEAST-SQUARES REFINEMENT OF THE SULFHYDRYL PROTEASE PAPAIN TO 2.0 ANGSTROMS

Jansonius, J.N.

(1984) Acta Crystallogr A 40: 17

Released	1985-01-02
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	2-HYDROXYETHYL-THIOPAPAIN

Explore in 3D

1PPN: Entity 1	Download File View File

STRUCTURE OF MONOCLINIC PAPAIN AT 1.60 ANGSTROMS RESOLUTION

Pickersgill, R.W., Harris, G.W., Garman, E.

(1992) Acta Crystallogr B 48: 59-67

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.6 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

1PPO: Entity 1	Download File View File

DETERMINATION OF THE STRUCTURE OF PAPAYA PROTEASE OMEGA

Pickersgill, R.W., Rizkallah, P.J., Harris, G.W., Goodenough, P.W.

(1991) Acta Crystallogr B 47: 766-771

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PROTEASE OMEGA

Explore in 3D

1PPP: Entity 1	Download File View File

CRYSTAL STRUCTURE OF PAPAIN-E64-C COMPLEX. BINDING DIVERSITY OF E64-C TO PAPAIN S2 AND S3 SUBSITES

Ishida, T.

(1992) Biochem J 287: 797-803

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

1STF: Entity 1	Download File View File

THE REFINED 2.4 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF RECOMBINANT HUMAN STEFIN B IN COMPLEX WITH THE CYSTEINE PROTEINASE PAPAIN: A NOVEL TYPE OF PROTEINASE INHIBITOR INTERACTION

Stubbs, M.T., Laber, B., Bode, W.

(1990) EMBO J 9: 1939-1947

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.37 Å
Chain ID	A [auth E]
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

2IWA: Entity 1	Download File View File

Unbound glutaminyl cyclotransferase from Carica papaya.

Guevara, T., Mallorqui-Fernandez, N., Garcia-Castellanos, R., Petersen, G.E., Lauritzen, C., Pedersen, J., Arnau, J., Gomis-Ruth, F.X., Sola, M.

(2006) Biol Chem 387: 1479

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.6 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	GLUTAMINE CYCLOTRANSFERASE

Explore in 3D

2PAD: Entity 1	Download File View File

BINDING OF CHLOROMETHYL KETONE SUBSTRATE ANALOGUES TO CRYSTALLINE PAPAIN

Drenth, J., Kalk, K.H., Swen, H.M.

(1976) Biochemistry 15: 3731-3738

Released	1977-04-12
Method	X-RAY DIFFRACTION 2.8 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

4PAD: Entity 1	Download File View File

Binding of chloromethyl ketone substrate analogues to crystalline papain

Drenth, J.

(1976) Biochemistry 15: 3731-3738

Released	1977-04-12
Method	X-RAY DIFFRACTION 2.8 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

5PAD: Entity 1	Download File View File

BINDING OF CHLOROMETHYL KETONE SUBSTRATE ANALOGUES TO CRYSTALLINE PAPAIN

Drenth, J., Kalk, K.H., Swen, H.M.

(1976) Biochemistry 15: 3731-3738

Released	1977-04-12
Method	X-RAY DIFFRACTION 2.8 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

6H8T: Entity 1	Download File View File

Crystal structure of Papain modify by achiral Ru(II)complex

Cherrier, M.V., Amara, P., Talbi, B., Salmin, M., Fontecilla-Camps, J.C.

(2018) Metallomics 10: 1452-1459

Released	2018-09-12
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B [auth J]
Organism	Carica papaya
Macromolecule	Papain

Explore in 3D

6PAD: Entity 1	Download File View File

Binding of chloromethyl ketone substrate analogues to crystalline papain

Drenth, J., Kalk, K.H., Swen, H.M.

(1976) Biochemistry 15: 3731-3738

Released	1977-04-12
Method	X-RAY DIFFRACTION 2.8 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

Explore in 3D

9PAP: Entity 1	Download File View File

STRUCTURE OF PAPAIN REFINED AT 1.65 ANGSTROMS RESOLUTION

Kamphuis, I.G., Drenth, J.

(1984) J Mol Biol 179: 233-256

Released	1986-10-24
Method	X-RAY DIFFRACTION 1.65 Å
Chain ID	A
Organism	Carica papaya
Macromolecule	PAPAIN

1 to 18 of 18 Polymer Entities

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification