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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Scientific Name of the Source Organism = "Synechocystis sp. PCC 6803"

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Search Summary

This query matches 90 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (90)

Scientific Name of Source Organism

	Simian immunodeficiency virus (82)
	Simian immunodeficiency virus - cpz (3)
	Cercocebus atys (1)
	Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY) (1)
	Simian immunodeficiency virus (MM251 ISOLATE) (1)
	Simian immunodeficiency virus (isolate PBj14/BCL-3) (1)
	Simian immunodeficiency virus - mac (1)
	Simian immunodeficiency virus - mac K6W (1)
	Tequatrovirus T4 (1)
	Vibrio cholerae (1)

Taxonomy

	Riboviria (87)
	Riboviria (RNA viruses and viroids) (3)
	Bacteria (1)
	Duplodnaviria (1)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (54)
	ELECTRON MICROSCOPY (27)
	SOLUTION NMR (9)

Polymer Entity Type

	Protein (82)
	DNA (8)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (5)
	2.0 - 2.5 (23)
	2.5 - 3.0 (20)
	3.0 - 3.5 (16)
	3.5 - 4.0 (5)
	4.0 - 4.5 (8)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (13)
	2000 - 2004 (6)
	2005 - 2009 (3)
	2010 - 2014 (16)
	2015 - 2019 (14)
	2020 - 2024 (32)
	2025 - 2029 (3)

Enzyme Classification Name

Hydrolases (6)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (44)
	Cyclic (47)

SCOP Classification

	Coiled coil proteins (11)
	All beta proteins (11)
	Alpha and beta proteins (a/b) (4)
	All alpha proteins (6)
	Artifacts (3)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 90 Polymer Entities

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1AZ5: Entity 1	Download File View File

UNLIGANDED SIV PROTEASE STRUCTURE IN AN "OPEN" CONFORMATION

Rose, R.B., Craik, C.S., Stroud, R.M.

(1998) Biochemistry 37: 2607-2621

Released	1998-05-27
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE

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1C6V: Entity 1	Download File View File

SIV INTEGRASE (CATALYTIC DOMAIN + DNA BIDING DOMAIN COMPRISING RESIDUES 50-293) MUTANT WITH PHE 185 REPLACED BY HIS (F185H)

Chen, Z., Yan, Y., Munshi, S., Li, Y., Zruygay-Murphy, J., Xu, B., Witmer, M., Felock, P., Wolfe, A., Sardana, V., Emini, E.A., Hazuda, D., Kuo, L.C.

(2000) J Mol Biol 296: 521-533

Released	2000-12-27
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	A, B, C, D
Organism	Simian immunodeficiency virus
Macromolecule	PROTEIN (SIV INTEGRASE)

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1C6V: Entity 2	Download File View File

SIV INTEGRASE (CATALYTIC DOMAIN + DNA BIDING DOMAIN COMPRISING RESIDUES 50-293) MUTANT WITH PHE 185 REPLACED BY HIS (F185H)

Chen, Z., Yan, Y., Munshi, S., Li, Y., Zruygay-Murphy, J., Xu, B., Witmer, M., Felock, P., Wolfe, A., Sardana, V., Emini, E.A., Hazuda, D., Kuo, L.C.

(2000) J Mol Biol 296: 521-533

Released	2000-12-27
Method	X-RAY DIFFRACTION 3 Å
Chain ID	E [auth X]
Organism	Simian immunodeficiency virus
Macromolecule	PROTEIN (SIU89134)

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1ECW: Entity 1	Download File View File

CRYSTAL STRUCTURE OF SIMIAN IMMUNODEFICIENCY VIRUS MATRIX ANTIGEN (SIV MA) AT 293K.

Rao, Z., Belyaev, A., Fry, E., Roy, P., Jones, I.M., Stuart, D.I.

(1995) Nature 378: 743-747

Released	2000-02-16
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Simian immunodeficiency virus
Macromolecule	GAG POLYPROTEIN

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1ED1: Entity 1	Download File View File

CRYSTAL STRUCTURE OF SIMIAN IMMUNODEFICIENCY VIRUS MATRIX ANTIGEN (SIV MA) AT 100K.

Rao, Z., Belyaev, A., Fry, E., Roy, P., Jones, I.M., Stuart, D.I.

(1995) Nature 378: 743-747

Released	2000-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Simian immunodeficiency virus - mac
Macromolecule	GAG POLYPROTEIN

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1JPX: Entity 1	Download File View File

Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Wild type.

Liu, J., Wang, S., LaBranche, C.C., Hoxie, J.A., Lu, M.

(2002) J Biol Chem 277: 12891-12900

Released	2002-04-24
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B [auth D], C [auth G]
Organism	Simian immunodeficiency virus
Macromolecule	gp41 envelope protein

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1JQ0: Entity 1	Download File View File

Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Mutant structure.

Liu, J., Wang, S., LaBranche, C.C., Hoxie, J.A., Lu, M.

(2002) J Biol Chem 277: 12891-12900

Released	2002-04-24
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Simian immunodeficiency virus
Macromolecule	gp41 envelope protein

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1QBZ: Entity 1	Download File View File

THE CRYSTAL STRUCTURE OF THE SIV GP41 ECTODOMAIN AT 1.47 A

Yang, Z.-N., Mueser, T.C., Kaufman, J., Stahl, S.J., Wingfield, P.T., Hyde, C.C.

(1999) J Struct Biol 126: 131-144

Released	1999-05-17
Method	X-RAY DIFFRACTION 1.47 Å
Chain IDs	A, B, C
Organism	Simian immunodeficiency virus
Macromolecule	PROTEIN (SIV GP41 ECTODOMAIN)

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1QCE: Entity 1	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, RESTRAINED REGULARIZED MEAN STRUCTURE PLUS 29 SIMULATED ANNEALING STRUCTURES

Clore, G.M.

(1999) J Am Chem Soc 121: 2337-2338

Released	1999-07-18
Method	SOLUTION NMR
Chain IDs	A, B, C
Organism	Simian immunodeficiency virus
Macromolecule	PROTEIN (GP41)

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1SIP: Entity 1	Download File View File

ALTERNATIVE NATIVE FLAP CONFORMATION REVEALED BY 2.3 ANGSTROMS RESOLUTION STRUCTURE OF SIV PROTEINASE

Wilderspin, A.F.

(1994) J Mol Biol 239: 97-103

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Chain ID	A
Organism	Simian immunodeficiency virus
Macromolecule	UNLIGANDED SIV PROTEASE

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1SIV: Entity 1	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A SIV PROTEASE(SLASH)INHIBITOR COMPLEX. IMPLICATIONS FOR THE DESIGN OF HIV-1 AND HIV-2 PROTEASE INHIBITORS

Zhao, B., Abdel-Meguid, S.

(1993) Biochemistry 32: 13054-13060

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, B
Organism	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE

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1TCW: Entity 1	Download File View File

SIV PROTEASE COMPLEXED WITH INHIBITOR SB203386

Hoog, S.S., Abdel-Meguid, S.S.

(1996) Biochemistry 35: 10279-10286

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B
Organism	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE

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1YTI: Entity 1	Download File View File

SIV PROTEASE CRYSTALLIZED WITH PEPTIDE PRODUCT

Rose, R.B., Craik, C.S., Douglas, N.L., Stroud, R.M.

(1996) Biochemistry 35: 12933-12944

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE

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1YTJ: Entity 1	Download File View File

SIV PROTEASE CRYSTALLIZED WITH PEPTIDE PRODUCT

Rose, R.B., Craik, C.S., Douglas, N.L., Stroud, R.M.

(1996) Biochemistry 35: 12933-12944

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE

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2A51: Entity 1	Download File View File

Structure of the (13-51) domain of the nucleocapsid protein NCp8 from SIVlhoest

Morellet, N., Meudal, H., Bouaziz, S., Roques, B.P.

(2006) Biochem J 393: 725-732

Released	2006-06-20
Method	SOLUTION NMR
Chain ID	A
Organism	Simian immunodeficiency virus
Macromolecule	nucleocapsid protein

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2BF1: Entity 1	Download File View File

Structure of an unliganded and fully-glycosylated SIV gp120 envelope glycoprotein

Chen, B., Vogan, E.M., Gong, H., Skehel, J.J., Wiley, D.C., Harrison, S.C.

(2005) Nature 433: 834

Released	2005-02-17
Method	X-RAY DIFFRACTION 4 Å
Chain ID	A
Organism	Simian immunodeficiency virus
Macromolecule	EXTERIOR MEMBRANE GLYCOPROTEIN GP120

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2EZO: Entity 1	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, RESTRAINED REGULARIZED MEAN STRUCTURE

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Chain IDs	A, B, C
Organism	Simian immunodeficiency virus
Macromolecule	GP41

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2EZP: Entity 1	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 1-10 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Chain IDs	A, B, C
Organism	Simian immunodeficiency virus
Macromolecule	GP41

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2EZQ: Entity 1	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 11-20 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Chain IDs	A, B, C
Organism	Simian immunodeficiency virus
Macromolecule	GP41

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2EZR: Entity 1	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 21-30 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Chain IDs	A, B, C
Organism	Simian immunodeficiency virus
Macromolecule	GP41

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2EZS: Entity 1	Download File View File

SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, MODELS 31-40 OF AN ENSEMBLE OF 40 SIMULATED ANNEALING STRUCTURES

Caffrey, M., Gronenborn, A.M., Clore, G.M.

(1998) EMBO J 17: 4572-4584

Released	1998-10-14
Method	SOLUTION NMR
Chain IDs	A, B, C
Organism	Simian immunodeficiency virus
Macromolecule	GP41

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2SAM: Entity 1	Download File View File

STRUCTURE OF THE PROTEASE FROM SIMIAN IMMUNODEFICIENCY VIRUS: COMPLEX WITH AN IRREVERSIBLE NON-PEPTIDE INHIBITOR

Rose, R.B., Rose, J.R., Salto, R., Craik, C.S., Stroud, R.M.

(1993) Biochemistry 32: 12498-12507

Released	1994-10-15
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	A
Organism	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE

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2SIV: Entity 1	Download File View File

SIV GP41 CORE STRUCTURE

Malashkevich, V.N., Chan, D.C., Chutkowski, C.T., Kim, P.S.

(1998) Proc Natl Acad Sci U S A 95: 9134-9139

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, C, E
Organism	Simian immunodeficiency virus
Macromolecule	SIV GP41 GLYCOPROTEIN

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2SIV: Entity 2	Download File View File

SIV GP41 CORE STRUCTURE

Malashkevich, V.N., Chan, D.C., Chutkowski, C.T., Kim, P.S.

(1998) Proc Natl Acad Sci U S A 95: 9134-9139

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	F, B, D
Organism	Simian immunodeficiency virus
Macromolecule	SIV GP41 GLYCOPROTEIN

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2XS1: Entity 2	Download File View File

Crystal Structure of ALIX in complex with the SIVmac239 PYKEVTEDL Late Domain

Zhai, Q., Landesman, M., Robinson, H., Sundquist, W.I., Hill, C.P.

(2011) J Virol 85: 632

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.296 Å
Chain ID	B
Organism	Simian immunodeficiency virus
Macromolecule	GAG POLYPROTEIN

1 to 25 of 90 Polymer Entities

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