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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "APP"

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Search Summary

This query matches 89 Structures.

Refinements

Structure Determination Methodology

experimental (89)

Scientific Name of Source Organism

	Homo sapiens (79)
	Mus musculus (11)
	Rattus norvegicus (3)
	Naja sagittifera (2)
	Neurospora crassa OR74A (2)
	synthetic construct (2)
	Equus caballus (1)
	Staphylococcus aureus (1)

Taxonomy

	Eukaryota (81)
	Eukaryota (eukaryotes) (23)
	other sequences (2)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (44)
	SOLUTION NMR (20)
	ELECTRON MICROSCOPY (18)
	SOLID-STATE NMR (7)

Polymer Entity Type

Protein (89)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (12)
	2.0 - 2.5 (18)
	2.5 - 3.0 (13)
	3.0 - 3.5 (7)
	3.5 - 4.0 (5)
	4.0 - 4.5 (3)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (1)
	2000 - 2004 (9)
	2005 - 2009 (21)
	2010 - 2014 (13)
	2015 - 2019 (18)
	2020 - 2024 (26)

Enzyme Classification Name

Hydrolases (15)

Membrane Protein Annotation

	MemProtMD (10)
	PDBTM (10)
	OPM (8)
	mpstruc (1)

Symmetry Type

	Asymmetric (64)
	Cyclic (21)
	Helical (6)
	Octahedral (1)

SCOP Classification

	All beta proteins (21)
	Artifacts (9)
	Alpha and beta proteins (a+b) (10)
	Small proteins (9)
	All alpha proteins (6)
	Peptides (5)

AllSelected

1 to 25 of 89 Structures

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1BRC	Download File View File

RELOCATING A NEGATIVE CHARGE IN THE BINDING POCKET OF TRYPSIN

Perona, J.J., Fletterick, R.J.

(1993) J Mol Biol 230: 934-949

Released	1994-05-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	AMYLOID BETA-PROTEIN PRECURSOR INHIBITOR DOMAIN (APPI) (protein) TRYPSIN (protein)

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1HZ3	Download File View File

ALZHEIMER'S DISEASE AMYLOID-BETA PEPTIDE (RESIDUES 10-35)

Zhang, S., Iwata, K., Lachenmann, M.J., Peng, J.W., Li, S., Stimson, E.R., Lu, Y., Felix, A.M., Maggio, J.E., Lee, J.P.

(2000) J Struct Biol 130: 130-141

Released	2001-01-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	A-BETA AMYLOID (protein)

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1IYT	Download File View File

Solution structure of the Alzheimer's disease amyloid beta-peptide (1-42)

Crescenzi, O., Tomaselli, S., Guerrini, R., Salvadori, S., D'Ursi, A.M., Temussi, P.A., Picone, D.

(2002) Eur J Biochem 269: 5642-5648

Released	2003-02-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alzheimer's disease amyloid (protein)

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1M7E	Download File View File

Crystal structure of the phosphotyrosine binding domain(PTB) of mouse Disabled 2(Dab2):implications for Reeling signaling

Yun, M., Keshvara, L., Park, C.-G., Zhang, Y.-M., Dickerson, J.B., Zheng, J., Rock, C.O., Curran, T., Park, H.-W.

(2003) J Biol Chem 278: 36572-36581

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Disabled homolog 2 (protein) NGYENPTYK peptide (protein)

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1OQN	Download File View File

Crystal structure of the phosphotyrosine binding domain (PTB) of mouse Disabled 1 (Dab1)

Yun, M., Keshvara, L., Park, C.-G., Zhang, Y.-M., Dickerson, J.B., Zheng, J., Rock, C.O., Curran, T., Park, H.-W.

(2003) J Biol Chem 278: 36572-36581

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Alzheimer's disease amyloid A4 protein homolog (protein) Disabled homolog 1 (protein)
Unique Ligands	I3P

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1OWT	Download File View File

Structure of the Alzheimer's disease amyloid precursor protein copper binding domain

Barnham, K.J., McKinstry, W.J., Multhaup, G., Galatis, D., Morton, C.J., Curtain, C.C., Williamson, N.A., White, A.R., Hinds, M.G., Norton, R.S., Beyreuther, K., Masters, C.L., Parker, M.W., Cappai, R.

(2003) J Biol Chem 278: 17401-17407

Released	2003-05-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein (protein)

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1QWP	Download File View File

NMR analysis of 25-35 fragment of beta amyloid peptide

D'Ursi, A.M., Armenante, M.R., Guerrini, R., Salvadori, S., Sorrentino, G., Picone, D.

(2004) J Med Chem 47: 4231-4238

Released	2004-09-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	11-mer peptide from Amyloid beta A4 protein (protein)

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1QXC	Download File View File

NMR structure of the fragment 25-35 of beta amyloid peptide in 20/80 v:v hexafluoroisopropanol/water mixture

D'Ursi, A.M., Armenante, M.R., Guerrini, R., Salvadori, S., Sorrentino, G., Picone, D.

(2004) J Med Chem 47: 4231-4238

Released	2004-09-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	11-mer peptide from Amyloid beta A4 protein (protein)

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1QYT	Download File View File

Solution structure of fragment (25-35) of beta amyloid peptide in SDS micellar solution

D'Ursi, A.M., Armenante, M.R., Guerrini, R., Salvadori, S., Sorrentino, G., Picone, D.

(2004) J Med Chem 47: 4231-4238

Released	2004-12-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	11-mer peptide from Amyloid beta A4 protein (protein)

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1TKN	Download File View File

Solution structure of CAPPD*, an independently folded extracellular domain of human Amyloid-beta Precursor Protein

Dulubova, I., Ho, A., Huryeva, I., Sudhof, T.C., Rizo, J.

(2004) Biochemistry 43: 9583-9588

Released	2004-08-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein (protein)

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1X11	Download File View File

X11 PTB DOMAIN

Lee, C.-H., Zhang, Z., Kuriyan, J.

(1997) EMBO J 16: 6141-6150

Released	1998-01-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	13-MER PEPTIDE (protein) X11 (protein)

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1Z0Q	Download File View File

Aqueous Solution Structure of the Alzheimer's Disease Abeta Peptide (1-42)

Tomaselli, S., Esposito, V., Vangone, P., van Nuland, N.A., Bonvin, A.M., Guerrini, R., Tancredi, T., Temussi, P.A., Picone, D.

(2006) Chembiochem 7: 257-267

Released	2006-05-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alzheimer's disease amyloid (protein)

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1ZE7	Download File View File

Zinc-binding domain of Alzheimer's disease amyloid beta-peptide in water solution at pH 6.5

Zirah, S., Kozin, S.A., Mazur, A.K., Blond, A., Cheminant, M., Segalas-Milazzo, I., Debey, P., Rebuffat, S.

(2006) J Biol Chem 281: 2151-2161

Released	2005-05-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	16-mer from Alzheimer's disease amyloid Protein (protein)

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1ZE9	Download File View File

Zinc-binding domain of Alzheimer's disease amyloid beta-peptide complexed with a zinc (II) cation

Zirah, S., Kozin, S.A., Mazur, A.K., Blond, A., Cheminant, M., Segalas-Milazzo, I., Debey, P., Rebuffat, S.

(2006) J Biol Chem 281: 2151-2161

Released	2005-05-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	16-mer from Alzheimer's disease amyloid Protein (protein)
Unique Ligands	ZN

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1ZJD	Download File View File

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with Kunitz Protease Inhibitor Domain of Protease Nexin II

Jin, L., Navaneetham, D., Pandey, P., Strickler, J.E., Babine, R.E., Walsh, P.N., Abdel-Meguid, S.S.

(2005) J Biol Chem 280: 36165-36175

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Catalytic Domain of Coagulation Factor XI (protein) Kunitz Protease Inhibitory Domain of Protease Nexin II (protein)

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2BEG	Download File View File

3D Structure of Alzheimer's Abeta(1-42) fibrils

Luhrs, T., Ritter, C., Adrian, M., Riek-Loher, D., Bohrmann, B., Dobeli, H., Schubert, D., Riek, R.

(2005) Proc Natl Acad Sci U S A 102: 17342-17347

Released	2005-11-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein (protein)

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2FJZ	Download File View File

Structure of the Alzheimer's Amyloid Precursor Protein (APP) copper binding domain (residues 133 to 189) in 'small unit cell' form, metal-free

Kong, G.K.-W., Parker, M.W.

(2007) J Mol Biol 367: 148-161

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein precursor (protein)

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2FK1	Download File View File

Structure of the Alzheimer's Amyloid Precursor Protein (APP) Copper Binding Domain in 'small unit cell' form, Cu(II)-bound

Kong, G.K.-W., Parker, M.W.

(2007) J Mol Biol 367: 148-161

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein precursor (protein)
Unique Ligands	CU

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2FK2	Download File View File

Structure of the Alzheimer's Amyloid Precursor Protein (APP) Copper Binding Domain in 'small unit cell' form, Cu(I)-bound

Kong, G.K.-W., Parker, M.W.

(2007) J Mol Biol 367: 148-161

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein precursor (protein)
Unique Ligands	CU1

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2FK3	Download File View File

Structure of the Alzheimer's Amyloid Precursor Protein (APP) Copper Binding Domain in 'large unit cell' form

Kong, G.K.-W., Parker, M.W.

(2007) J Mol Biol 367: 148-161

Released	2007-01-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein precursor (protein)
Unique Ligands	CU

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2FKL	Download File View File

Structure of the Alzheimer's Amyloid Precursor Protein (APP) Copper Binding Domain (Residues 126- 189 of APP)

Kong, G.K.-W., Parker, M.W.

(2007) J Mol Biol 367: 148-161

Released	2007-01-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein precursor (protein)

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2G47	Download File View File

Crystal structure of human insulin-degrading enzyme in complex with amyloid-beta (1-40)

Shen, Y., Tang, W.-J.

(2006) Nature 443: 870-874

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Insulin-degrading enzyme (protein) amyloid protein beta A4 (protein)
Unique Ligands	DIO

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2IPU	Download File View File

PFA1 Fab fragment complexed with Abeta 1-8 peptide

Gardberg, A.S., Dealwis, C.

(2007) Proc Natl Acad Sci U S A 104: 15659-15664

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	IgG2a Fab fragment Heavy Chain (protein) IgG2a Fab fragment Light Chain Kappa (protein) abeta 1-8 peptide (protein)
Unique Ligands	ACM, GOL

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2LLM	Download File View File

Structure of amyloid precursor protein's transmembrane domain

Nadezhdin, K.D., Bocharova, O.V., Bocharov, E.V., Arseniev, A.S.

(2011) Acta Naturae 3: 69-76

Released	2012-06-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein (protein)

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2LOH	Download File View File

Dimeric structure of transmembrane domain of amyloid precursor protein in micellar environment

Nadezhdin, K., Bocharov, E., Bocharova, O., Arseniev, A.

(2012) FEBS Lett 586: 1687-1692

Released	2012-05-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	P3(42) (protein)

1 to 25 of 89 Structures

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