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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "TDT"

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Search Summary

This query matches 35 Structures.

Refinements

Structure Determination Methodology

experimental (35)

Scientific Name of Source Organism

	Mus musculus (34)
	synthetic construct (3)
	Homo sapiens (1)

Taxonomy

	Eukaryota (35)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (34)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (35)
	DNA (26)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (16)
	2.5 - 3.0 (16)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (17)
	2015 - 2019 (16)

Enzyme Classification Name

	Transferases (35)
	Hydrolases (34)

Symmetry Type

Asymmetric (35)

SCOP Classification

	All alpha proteins (31)
	Alpha and beta proteins (a+b) (31)

AllSelected

1 to 25 of 35 Structures

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Explore in 3D

1JMS	Download File View File

Crystal Structure of the Catalytic Core of Murine Terminal Deoxynucleotidyl Transferase

Delarue, M., Boule, J.B., Lescar, J., Expert-Bezancon, N., Sukumar, N., Jourdan, N., Rougeon, F., Papanicolaou, C.

(2002) EMBO J 21: 427-439

Released	2002-01-23
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Mus musculus
Macromolecule	TERMINAL DEOXYNUCLEOTIDYLTRANSFERASE (protein)
Unique Ligands	MG, NA

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2COE	Download File View File

Solution structure of BRCT domain of terminal deoxynucleotidyltransferase

Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-11-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	deoxynucleotidyltransferase, terminal variant (protein)

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4I27	Download File View File

Ternary complex of mouse TdT with ssDNA and incoming nucleotide

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAPAPT)-3' (nucleic acid)
Unique Ligands	D3T, MG, NA

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4I28	Download File View File

Binary complex of mouse TdT with ssDNA and Zn++

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAP*A)-3' (nucleic acid)
Unique Ligands	MG, NA, ZN

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4I29	Download File View File

Binary complex of mouse TdT with ssDNA and Mn++

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAP(8BA)PAP*A)-3' (nucleic acid)
Unique Ligands	MN, NA

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4I2A	Download File View File

Binary complex of mouse TdT with ssDNA in absence of divalent transition metal ion

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAP(BRU)PAP*A)-3' (nucleic acid)
Unique Ligands	MG, NA

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4I2B	Download File View File

Ternary complex of mouse TdT with ssDNA and AMPcPP

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(PAPAPAPAP*A)-3' (nucleic acid)
Unique Ligands	APC, MG, NA

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4I2C	Download File View File

Ternary complex of mouse TdT with ssDNA and AMPcPP

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAP*A)-3' (nucleic acid)
Unique Ligands	APC, MN, NA

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4I2D	Download File View File

Binary complex of mouse TdT with AMPcPP

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein)
Unique Ligands	APC, MG, NA, ZN

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4I2E	Download File View File

Ternary complex of mouse TdT with ssDNA and AMPcPP

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAP*A)-3' (nucleic acid)
Unique Ligands	APC, CO, NA

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4I2F	Download File View File

Binary complex of mouse TdT with ssDNA

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(PAPAPAPAP*A)-3' (nucleic acid)
Unique Ligands	MG, NA, ZN

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4I2G	Download File View File

Binary complex of mouse TdT with ssDNA

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(PAPAPAPAP*A)-3' (nucleic acid)
Unique Ligands	CO, MG, NA

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4I2H	Download File View File

Ternary complex of mouse TdT with ssDNA and AMPcPP

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(PAPAPAPAP*A)-3' (nucleic acid)
Unique Ligands	APC, MG, NA, ZN

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4I2I	Download File View File

Binary complex of mouse TdT with AP5A

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein)
Unique Ligands	AP5, MG, ZN

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4I2J	Download File View File

Binary complex of mouse TdT with dCTP

Gouge, J., Delarue, M.

(2013) J Mol Biol 425: 4334-4352

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein)
Unique Ligands	DCP, ZN

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4IQT	Download File View File

Tdt core in complex with inhibitor 6-[4-(3-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid

Gouge, J., Delarue, M.

(2013) J Med Chem 56: 7431-7441

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein)
Unique Ligands	1FO

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4IQU	Download File View File

Tdt core in complex with inhibitor (2Z,5E)-6-[4-(4-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid

Gouge, J., Delarue, M.

(2013) J Med Chem 56: 7431-7441

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein)
Unique Ligands	1FQ, NA

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4IQV	Download File View File

Tdt core in complex with inhibitor 6-[4-(3-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid and ssDNA

Gouge, J., Delarue, M.

(2013) J Med Chem 56: 7431-7441

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(GPCPCPG)-3' (nucleic acid)
Unique Ligands	1FO, NA

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4IQW	Download File View File

Tdt core in complex with inhibitor (2Z,5E)-6-[4-(4-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid and ssDNA

Gouge, J., Delarue, M.

(2013) J Med Chem 56: 7431-7441

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(GPCPCPG)-3' (nucleic acid)
Unique Ligands	1FQ, NA

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4QZ8	Download File View File

Mouse Tdt in complex with a DSB substrate, C-G base pair

Gouge, J., Delarue, M.

(2015) EMBO J 34: 1126-1142

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAPAPC)-3' (nucleic acid) 5'-D(TPTPTPTPTPGP*G)-3' (nucleic acid)
Unique Ligands	DCT, MG, NA

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4QZ9	Download File View File

Mouse Tdt in complex with a DSB substrate, C-A base pair

Gouge, J., Delarue, M.

(2015) EMBO J 34: 1126-1142

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAPAPC)-3' (nucleic acid) 5'-D(TPTPTPTPTPGP*A)-3' (nucleic acid)
Unique Ligands	DCT, MG, NA

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4QZA	Download File View File

Mouse Tdt in complex with a DSB substrate, C-C base pair

Gouge, J., Delarue, M.

(2015) EMBO J 34: 1126-1142

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAPAPC)-3' (nucleic acid) 5'-D(TPTPTPTPTPGP*C)-3' (nucleic acid)
Unique Ligands	DCT, MG, NA

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4QZB	Download File View File

Mouse Tdt in complex with a DSB substrate, C-T base pair

Gouge, J., Delarue, M.

(2015) EMBO J 34: 1126-1142

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAPAPC)-3' (nucleic acid) 5'-D(TPTPTPTPTPGP*T)-3' (nucleic acid)
Unique Ligands	DCT, MG, NA

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4QZC	Download File View File

Mouse Tdt, F405A mutant, in complex with a DSB substrate, C-G base pair

Gouge, J., Delarue, M.

(2015) EMBO J 34: 1126-1142

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAPAPC)-3' (nucleic acid) 5'-D(TPTPTPTPTPGP*G)-3' (nucleic acid)
Unique Ligands	DCT, MG, NA

Explore in 3D

4QZD	Download File View File

Mouse Tdt, F405A mutant, in complex with a DSB substrate, C-C base pair

Gouge, J., Delarue, M.

(2015) EMBO J 34: 1126-1142

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	DNA nucleotidylexotransferase (protein) 5'-D(APAPAPAPAPC)-3' (nucleic acid) 5'-D(TPTPTPTPTPGP*C)-3' (nucleic acid)
Unique Ligands	DCT, MG, NA

1 to 25 of 35 Structures

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