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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "129337"

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Search Summary

This query matches 166 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (166)

Scientific Name of Source Organism

	Homo sapiens (52)
	Lactiplantibacillus plantarum WCFS1 (18)
	Pseudomonas savastanoi pv. phaseolicola (14)
	Lactiplantibacillus plantarum (12)
	Hepatitis B virus (7)
	Rattus norvegicus (7)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (6)
	Saccharomyces cerevisiae (5)
	Bordetella bronchiseptica RB50 (4)
	Danio rerio (4)

More...

Taxonomy

	Bacteria (81)
	Eukaryota (75)
	Riboviria (8)
	Eukaryota (eukaryotes) (4)
	Archaea (1)
	Duplodnaviria (1)
	Riboviria (RNA viruses and viroids) (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (125)
	ELECTRON MICROSCOPY (34)
	SOLUTION NMR (6)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (166)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (18)
	2.0 - 2.5 (44)
	2.5 - 3.0 (32)
	3.0 - 3.5 (29)
	3.5 - 4.0 (14)
	4.0 - 4.5 (4)
	> 4.5 (5)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (18)
	2010 - 2014 (17)
	2015 - 2019 (76)
	2020 - 2024 (50)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (37)
	Lyases (19)
	Oxidoreductases (19)
	Hydrolases (13)
	Ligases (7)
	Isomerases (5)

Membrane Protein Annotation

	mpstruc (18)
	PDBTM (23)
	OPM (11)
	MemProtMD (12)

Symmetry Type

	Asymmetric (93)
	Cyclic (43)
	Dihedral (25)
	Icosahedral (7)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	All beta proteins (5)
	Alpha and beta proteins (a/b) (3)
	All alpha proteins (4)
	Artifacts (5)

AllSelected

1 to 25 of 166 Polymer Entities

Page 1 of 7

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1RPY	Download File View File

CRYSTAL STRUCTURE OF THE DIMERIC SH2 DOMAIN OF APS

Hu, J., Liu, J., Ghirlando, R., Saltiel, A.R., Hubbard, S.R.

(2003) Mol Cell 12: 1379-1389

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	adaptor protein APS (protein)
Unique Ligands	SO4

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1RQQ	Download File View File

Crystal Structure of the Insulin Receptor Kinase in Complex with the SH2 Domain of APS

Hu, J., Liu, J., Ghirlando, R., Saltiel, A.R., Hubbard, S.R.

(2003) Mol Cell 12: 1379-1389

Released	2003-12-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	BISUBSTRATE INHIBITOR (protein) Insulin receptor (protein) adaptor protein APS (protein)
Unique Ligands	112, MN

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1VSQ	Download File View File

Solution NMR structure of the productive complex between IIAMannose and IIBMannose of the mannose transporter of the E. coli phosphotransferase system

Clore, G.M., Hu, J., Hu, K.

(2008) J Biol Chem 283: 11024-11037

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Mannose-specific phosphotransferase enzyme IIA component (protein) Mannose-specific phosphotransferase enzyme IIB component (protein)

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1XZ0	Download File View File

Crystal structure of CD1a in complex with a synthetic mycobactin lipopeptide

Zajonc, D.M., Crispin, M.D., Bowden, T.A., Young, D.C., Cheng, T.Y., Hu, J., Costello, C.E., Miller, M.J., Moody, D.B., Wilson, I.A.

(2005) Immunity 22: 209-219

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T-cell surface glycoprotein CD1a (protein)
Unique Ligands	JH0
Unique branched monosaccharides	FUC, NAG

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1YVH	Download File View File

Crystal Structure of the c-Cbl TKB Domain in Complex with the APS pTyr-618 Phosphopeptide

Hu, J., Hubbard, S.R.

(2005) J Biol Chem 280: 18943-18949

Released	2005-03-08
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	13-mer fragment of SH2 and PH domain-containing adapter protein APS (protein) CBL E3 ubiquitin protein ligase (protein)
Unique Ligands	MG

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2AUG	Download File View File

Crystal structure of the Grb14 SH2 domain

Depetris, R.S., Hu, J., Gimpelevich, I., Holt, L.J., Daly, R.J., Hubbard, S.R.

(2005) Mol Cell 20: 325-333

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Growth factor receptor-bound protein 14 (protein)

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2AUH	Download File View File

Crystal structure of the Grb14 BPS region in complex with the insulin receptor tyrosine kinase

Depetris, R.S., Hu, J., Gimpelevich, I., Holt, L.J., Daly, R.J., Hubbard, S.R.

(2005) Mol Cell 20: 325-333

Released	2005-11-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Growth factor receptor-bound protein 14 (protein) Insulin receptor (protein)
Unique Ligands	CA

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2H95	Download File View File

Structure of the Amantadine-Blocked Influenza A M2 Proton Channel Trans-membrane Domain by Solid-state NMR spectroscopy

Hu, J., Asbury, T., Cross, T.A.

(2007) Biophys J 92: 4335-4343

Released	2007-04-24
Method	SOLID-STATE NMR
Organisms	Influenza A virus
Macromolecule	Matrix protein 2 (protein)

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2HDV	Download File View File

Crystal structure of the Src Homology-2 domain of the adapter protein SH2-B

Hu, J., Hubbard, S.R.

(2006) J Mol Biol 361: 69-79

Released	2006-08-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	SH2-B PH domain containing signaling mediator 1 gamma isoform (protein)

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2HDX	Download File View File

Crystal structure of the Src homology-2 domain of SH2-B in complex with Jak2 pTyr813 phosphopeptide

Hu, J., Hubbard, S.R.

(2006) J Mol Biol 361: 69-79

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mus musculus
Macromolecule	Jak2 protein (protein) SH2-B PH domain containing signaling mediator 1 gamma isoform (protein)

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2JZN	Download File View File

Solution NMR structure of the productive complex between IIAMannose and IIBMannose of the mannose transporter of the E. coli phosphotransferase system

Clore, G.M., Hu, J., Hu, K.

(2008) J Biol Chem 283: 11024-11037

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Mannose-specific phosphotransferase enzyme IIA component (protein) Mannose-specific phosphotransferase enzyme IIB component (protein)

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2JZO	Download File View File

Solution NMR structure of the non-productive complex between IIAMannose and IIBMannose of the mannose transporter of the E. coli phosphotransferase system

Clore, G., Hu, J., Hu, K.

(2008) J Biol Chem 283: 11024-11037

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	PTS system mannose-specific EIIAB component (protein)

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2K3K	Download File View File

Solution structure of Drosophila melanogaster SNF RBD1

Liu, C., Cui, G., Hu, J., Jin, C., Xia, B.

To be published

Released	2008-06-03
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	U1 small nuclear ribonucleoprotein A (protein)

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2K4K	Download File View File

Solution structure of GSP13 from Bacillus subtilis

Yu, W., Yu, B., Hu, J., Jin, C., Xia, B.

(2009) J Biomol NMR 43: 255-259

Released	2009-05-12
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	General stress protein 13 (protein)

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2LTU	Download File View File

Solution Structure of autoinhibitory domain of human AMP-activated protein kinase catalytic subunit

Xia, B., Hu, J.

To be published

Released	2013-06-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	5'-AMP-activated protein kinase catalytic subunit alpha-2 (protein)

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2QLD	Download File View File

human Hsp40 Hdj1

Hu, J., Wu, Y., Li, J., Fu, Z., Sha, B.

(2008) BMC Struct Biol 8: 3-3

Released	2008-07-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	DnaJ homolog subfamily B member 1 (protein)

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3FP2	Download File View File

Crystal structure of Tom71 complexed with Hsp82 C-terminal fragment

Li, J., Qian, X., Hu, J., Sha, B.

(2009) J Biol Chem 284: 23852-23859

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	ATP-dependent molecular chaperone HSP82 (protein) TPR repeat-containing protein YHR117W (protein)
Unique Ligands	CL, MG

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3FP3	Download File View File

Crystal structure of Tom71

Li, J., Qian, X., Hu, J., Sha, B.

(2009) J Biol Chem 284: 23852-23859

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TPR repeat-containing protein YHR117W (protein)
Unique Ligands	CL, SO4

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3FP4	Download File View File

Crystal structure of Tom71 complexed with Ssa1 C-terminal fragment

Li, J., Qian, X., Hu, J., Sha, B.

(2009) J Biol Chem 284: 23852-23859

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Saccharomyces cerevisiae Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Macromolecule	Ssa1 (protein) TPR repeat-containing protein YHR117W (protein)
Unique Ligands	CL, NA, SO4

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3H84	Download File View File

Crystal structure of GET3

Hu, J., Li, J., Qian, X., Sha, B.

(2009) PLoS One 4: e8061-e8061

Released	2009-12-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ATPase GET3 (protein)
Unique Ligands	CL, MG, NA, ZN

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3IO3	Download File View File

GEt3 with ADP from D. Hansenii in Closed form

Hu, J., Li, J., Qian, X., Sha, B.

(2009) PLoS One 4: e8061-e8061

Released	2009-12-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Debaryomyces hansenii
Macromolecule	DEHA2D07832p (protein)
Unique Ligands	ADP, GOL, MG, NA, ZN

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3NYJ	Download File View File

Crystal Structure Analysis of APP E2 domain

Ha, Y., Hu, J., Lee, S., Liu, X.

(2011) Biochemistry 50: 5453-5464

Released	2011-06-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein (protein)
Unique Ligands	OS

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3NYL	Download File View File

The X-ray structure of an antiparallel dimer of the human amyloid precursor protein E2 domain

Ha, Y., Hu, J., Lee, S., Liu, X., Wang, Y.

(2004) Mol Cell 15: 343-353

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta (A4) protein (Peptidase nexin-II, Alzheimer disease), isoform CRA_b (protein)