RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy ID (Full Lineage) = "1311"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 160 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (160)

Scientific Name of Source Organism

	Streptococcus agalactiae (78)
	Streptococcus agalactiae NEM316 (21)
	Streptococcus agalactiae serogroup V (20)
	Streptococcus agalactiae 2603V/R (17)
	Streptococcus agalactiae serogroup III (6)
	Streptococcus agalactiae A909 (5)
	Streptococcus agalactiae COH1 (5)
	Streptococcus agalactiae 515 (3)
	Streptococcus agalactiae ILRI112 (2)
	Escherichia coli K-12 (1)

More...

Taxonomy

Bacteria (160)

Experimental Method

	X-RAY DIFFRACTION (152)
	ELECTRON MICROSCOPY (6)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (152)
	DNA (8)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (9)
	1.5 - 2.0 (45)
	2.0 - 2.5 (54)
	2.5 - 3.0 (30)
	3.0 - 3.5 (10)
	3.5 - 4.0 (3)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (4)
	2005 - 2009 (20)
	2010 - 2014 (51)
	2015 - 2019 (45)
	2020 - 2024 (38)

Enzyme Classification Name

	Hydrolases (28)
	Oxidoreductases (11)
	Transferases (6)
	Ligases (3)
	Lyases (3)

Symmetry Type

	Asymmetric (93)
	Cyclic (57)
	Dihedral (20)

SCOP Classification

	All alpha proteins (19)
	Alpha and beta proteins (a/b) (14)
	Artifacts (13)
	Alpha and beta proteins (a+b) (13)
	All beta proteins (6)

AllSelected

1 to 25 of 160 Polymer Entities

Page 1 of 7

Sort by

Explore in 3D

1B01: Entity 3	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX

Gomis-Rueth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.

(1998) EMBO J 17: 7404-7415

Released	1999-11-19
Method	X-RAY DIFFRACTION 2.56 Å
Chain IDs	C [auth A], D [auth B]
Organism	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG

Explore in 3D

1EA4: Entity 1	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX

Gomis-Rueth, F.X., Costa, M., Sola, M., Acebo, P., Eritja, R., Espinosa, M., Solar, G.D., Coll, M.

(2001) J Mol Biol 310: 403

Released	2001-07-05
Method	X-RAY DIFFRACTION 2.95 Å
Chain IDs	C [auth D], D [auth E], F [auth G], G [auth H], J [auth L] More (10)
Organism	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG

Explore in 3D

1F1S: Entity 1	Download File View File

CRYSTAL STRUCTURE OF STREPTOCOCCUS AGALACTIAE HYALURONATE LYASE AT 2.1 ANGSTROM RESOLUTION.

Li, S., Jedrzejas, M.J.

(2001) J Biol Chem 276: 41407-41416

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Streptococcus agalactiae
Macromolecule	HYALURONATE LYASE

Explore in 3D

1I8Q: Entity 1	Download File View File

CRYSTAL STRUCTURE OF STREPTOCOCCUS AGALACTIAE HYALURONATE LYASE COMPLEXED WITH ENZYME PRODUCT, UNSATURATED DISACCHARIDE HYALURONAN

Li, S., Jedrzejas, M.J.

(2001) J Biol Chem 276: 41407-41416

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Streptococcus agalactiae
Macromolecule	HYALURONATE LYASE

Explore in 3D

1LXM: Entity 1	Download File View File

Crystal Structure of Streptococcus agalactiae Hyaluronate Lyase Complexed with Hexasaccharide Unit of Hyaluronan

Mello, L.V., de Groot, B.L., Li, S., Jedrzejas, M.J.

(2002) J Biol Chem 277: 36678-36688

Released	2002-10-30
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Streptococcus agalactiae
Macromolecule	HYALURONATE Lyase

Explore in 3D

1YWM: Entity 1	Download File View File

Crystal structure of the N-terminal domain of group B Streptococcus alpha C protein

Auperin, T.C., Bolduc, G.R., Baron, M.J., Heroux, A., Filman, D.J., Madoff, L.C., Hogle, J.M.

(2005) J Biol Chem 280: 18245-18252

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.86 Å
Chain ID	A
Organism	Streptococcus agalactiae A909
Macromolecule	C protein alpha-antigen

Explore in 3D

2BDQ: Entity 1	Download File View File

Crystal Structure of the Putative Copper Homeostasis Protein CutC from Streptococcus agalactiae, Northeast Strucural Genomics Target SaR15.

Forouhar, F., Abashidze, M., Jayaraman, S., Ho, C.K., Cooper, B., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B
Organism	Streptococcus agalactiae
Macromolecule	copper homeostasis protein CutC

Explore in 3D

2CPG: Entity 1	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG

Gomis-Rueth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.

(1998) EMBO J 17: 7404-7415

Released	1999-11-19
Method	X-RAY DIFFRACTION 1.6 Å
Chain IDs	A, B, C
Organism	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG

Explore in 3D

2ENX: Entity 1	Download File View File

Structure of the family II inorganic pyrophosphatase from Streptococcus agalactiae at 2.8 resolution

Rantanen, M.K., Lehtio, L., Rajagopal, L., Rubens, C.E., Goldman, A.

(2007) Acta Crystallogr D Biol Crystallogr 63: 738-743

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Streptococcus agalactiae A909
Macromolecule	Manganese-dependent inorganic pyrophosphatase

Explore in 3D

2K5D: Entity 1	Download File View File

SOLUTION NMR STRUCTURE OF SAG0934 from Streptococcus agalactiae. NORTHEAST STRUCTURAL GENOMICS TARGET SaR32[1-108].

Aramini, J.M., Rossi, P., Zhao, L., Foote, E.L., Jiang, M., Xiao, R., Sharma, S., Swapna, G.VT., Nair, R., Everett, J.K., Acton, T.B., Rost, B., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2008-08-26
Method	SOLUTION NMR
Chain ID	A
Organism	Streptococcus agalactiae serogroup V
Macromolecule	uncharacterized protein SAG0934

Explore in 3D

2O0I: Entity 1	Download File View File

crystal structure of the R185A mutant of the N-terminal domain of the Group B Streptococcus Alpha C protein

Hogle, J.M., Filman, D.J., Baron, M.J., Madoff, L.C., Iglesias, A.

(2007) J Biol Chem 282: 10526-10536

Released	2007-02-06
Method	X-RAY DIFFRACTION 3.1 Å
Chain ID	A [auth 1]
Organism	Streptococcus agalactiae serogroup Ia
Macromolecule	C protein alpha-antigen

Explore in 3D

2O2A: Entity 1	Download File View File

The crystal structure of a protein of unknown function from Streptococcus agalactiae

Zhang, R., Zhou, M., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2006) To be published

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B, C, D
Organism	Streptococcus agalactiae 2603V/R
Macromolecule	Hypothetical protein gbs1413

Explore in 3D

2OGI: Entity 1	Download File View File

Crystal structure of a putative metal dependent phosphohydrolase (sag1661) from streptococcus agalactiae serogroup v at 1.85 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B
Organism	Streptococcus agalactiae serogroup V
Macromolecule	Hypothetical protein SAG1661

Explore in 3D

2P0L: Entity 1	Download File View File

Crystal structure of a Lipoate-protein ligase A

Sugadev, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-03-20
Method	X-RAY DIFFRACTION 2.04 Å
Chain ID	A
Organism	Streptococcus agalactiae COH1
Macromolecule	Lipoate-protein ligase A

Explore in 3D

2PC1: Entity 1	Download File View File

Crystal structure of acetyltransferase GNAT family (NP_688560.1) from Streptococcus agalactiae 2603 at 1.28 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-04-24
Method	X-RAY DIFFRACTION 1.28 Å
Chain ID	A
Organism	Streptococcus agalactiae 2603V/R
Macromolecule	Acetyltransferase, GNAT family

Explore in 3D

2PK0: Entity 1	Download File View File

Structure of the S. agalactiae serine/threonine phosphatase at 2.65 resolution

Rantanen, M.K., Lehtio, L., Rajagopal, L., Rubens, C.E., Goldman, A.

(2007) FEBS J 274: 3128-3137

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.65 Å
Chain IDs	A, B, C, D
Organism	Streptococcus agalactiae A909
Macromolecule	Serine/threonine protein phosphatase Stp1

Explore in 3D

2Q7B: Entity 1	Download File View File

Crystal structure of acetyltransferase (NP_689019.1) from Streptococcus agalactiae 2603 at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-06-26
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Streptococcus agalactiae 2603V/R
Macromolecule	Acetyltransferase, GNAT family

Explore in 3D

2XTL: Entity 1	Download File View File

Structure of the major pilus backbone protein from Streptococcus Agalactiae

Rinauda, D., Gourlay, L.J., Soriano, M., Grandi, G., Bolognesi, M.

(2011) Proc Natl Acad Sci U S A 108: 10278

Released	2011-07-06
Method	X-RAY DIFFRACTION 1.75 Å
Chain IDs	A, B
Organism	Streptococcus agalactiae 515
Macromolecule	CELL WALL SURFACE ANCHOR FAMILY PROTEIN

Explore in 3D

2ZZR: Entity 1	Download File View File

Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae

Maruyama, Y.

(2009) J Biol Chem 284: 18059-18069

Released	2009-04-14
Method	X-RAY DIFFRACTION 1.75 Å
Chain ID	A
Organism	Streptococcus agalactiae
Macromolecule	Unsaturated glucuronyl hydrolase

Explore in 3D

3ANI: Entity 1	Download File View File

Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae

Nakamichi, Y., Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.

(2011) J Biol Chem 286: 6262-6271

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Streptococcus agalactiae serogroup III
Macromolecule	Putative uncharacterized protein gbs1889

Explore in 3D

3ANJ: Entity 1	Download File View File

Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae

Nakamichi, Y., Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.

(2011) J Biol Chem 286: 6262-6271

Released	2010-10-06
Method	X-RAY DIFFRACTION 1.95 Å
Chain ID	A
Organism	Streptococcus agalactiae serogroup III
Macromolecule	Putative uncharacterized protein gbs1889

Explore in 3D

3ANK: Entity 1	Download File View File

Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S

Nakamichi, Y., Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.

(2011) J Biol Chem 286: 6262-6271

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.02 Å
Chain ID	A
Organism	Streptococcus agalactiae serogroup III
Macromolecule	Putative uncharacterized protein gbs1889

Explore in 3D

3DKX: Entity 1	Download File View File

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution

Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.

(2009) EMBO J 28: 1666-1678

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.7 Å
Chain IDs	A, B, C
Organism	Streptococcus agalactiae
Macromolecule	Replication protein repB

Explore in 3D

3DKY: Entity 1	Download File View File

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution

Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.

(2009) EMBO J 28: 1666-1678

Released	2009-06-30
Method	X-RAY DIFFRACTION 3.6 Å
Chain IDs	A, B, C, D, E
Organism	Streptococcus agalactiae
Macromolecule	Replication protein repB

Explore in 3D

3EPR: Entity 1	Download File View File

Crystal structure of putative HAD superfamily hydrolase from Streptococcus agalactiae.

Ramagopal, U.A., Toro, R., Dickey, M., Tang, B.K., Groshong, C., Rodgers, L., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-11-04
Method	X-RAY DIFFRACTION 1.55 Å
Chain ID	A
Organism	Streptococcus agalactiae serogroup V
Macromolecule	Hydrolase, haloacid dehalogenase-like family

1 to 25 of 160 Polymer Entities

Page 1 of 7

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification