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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "210"

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Search Summary

This query matches 746 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (746)

Scientific Name of Source Organism

	Helicobacter pylori (330)
	Helicobacter pylori 26695 (296)
	Helicobacter pylori J99 (40)
	Helicobacter pylori G27 (36)
	Helicobacter pylori SS1 (17)
	Helicobacter pylori (strain ATCC 700392 / 26695) (6)
	Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 (5)
	Helicobacter pylori P12 (5)
	Helicobacter pylori 51 (3)
	synthetic construct (3)

More...

Taxonomy

	Bacteria (746)
	other sequences (3)
	Eukaryota (2)

Experimental Method

	X-RAY DIFFRACTION (673)
	ELECTRON MICROSCOPY (40)
	SOLUTION NMR (33)
	NEUTRON DIFFRACTION (4)

Polymer Entity Type

	Protein (734)
	DNA (12)

Refinement Resolution (Å)

	1.0 - 1.5 (32)
	1.5 - 2.0 (182)
	2.0 - 2.5 (264)
	2.5 - 3.0 (170)
	3.0 - 3.5 (46)
	3.5 - 4.0 (20)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (36)
	2005 - 2009 (173)
	2010 - 2014 (188)
	2015 - 2019 (224)
	2020 - 2024 (125)

Enzyme Classification Name

	Transferases (108)
	Hydrolases (95)
	Lyases (69)
	Oxidoreductases (48)
	Ligases (28)
	Isomerases (23)

Membrane Protein Annotation

	mpstruc (17)
	OPM (16)
	PDBTM (8)
	MemProtMD (5)

Symmetry Type

	Cyclic (374)
	Asymmetric (270)
	Dihedral (124)
	Tetrahedral (26)
	Octahedral (9)

SCOP Classification

	Alpha and beta proteins (a/b) (159)
	Alpha and beta proteins (a+b) (80)
	All alpha proteins (57)
	Artifacts (63)
	All beta proteins (24)
	Multi-domain proteins (alpha and beta) (5)
	Peptides (7)
	Membrane and cell surface proteins and peptides (3)

AllSelected

1 to 25 of 746 Polymer Entities

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1E9Y: Entity 1	Download File View File

Crystal structure of Helicobacter pylori urease in complex with acetohydroxamic acid

Ha, N.-C., Oh, S.-T., Oh, B.-H.

(2001) Nat Struct Biol 8: 480

Released	2001-11-01
Method	X-RAY DIFFRACTION 3 Å
Chain ID	A
Organism	Helicobacter pylori
Macromolecule	UREASE SUBUNIT ALPHA

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1E9Y: Entity 2	Download File View File

Crystal structure of Helicobacter pylori urease in complex with acetohydroxamic acid

Ha, N.-C., Oh, S.-T., Oh, B.-H.

(2001) Nat Struct Biol 8: 480

Released	2001-11-01
Method	X-RAY DIFFRACTION 3 Å
Chain ID	B
Organism	Helicobacter pylori
Macromolecule	UREASE SUBUNIT BETA

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1E9Z: Entity 1	Download File View File

Crystal structure of Helicobacter pylori urease

Ha, N.-C., Oh, S.-T., Oh, B.-H.

(2001) Nat Struct Biol 8: 480

Released	2001-11-01
Method	X-RAY DIFFRACTION 3 Å
Chain ID	A
Organism	Helicobacter pylori
Macromolecule	UREASE SUBUNIT ALPHA

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1E9Z: Entity 2	Download File View File

Crystal structure of Helicobacter pylori urease

Ha, N.-C., Oh, S.-T., Oh, B.-H.

(2001) Nat Struct Biol 8: 480

Released	2001-11-01
Method	X-RAY DIFFRACTION 3 Å
Chain ID	B
Organism	Helicobacter pylori
Macromolecule	UREASE SUBUNIT BETA

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1FUE: Entity 1	Download File View File

FLAVODOXIN FROM HELICOBACTER PYLORI

Freigang, J., Diederichs, K., Schaefer, K.P., Welte, W., Paul, R.

(2002) Protein Sci 11: 253-261

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	A
Organism	Helicobacter pylori
Macromolecule	FLAVODOXIN

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1G6O: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI ATPASE, HP0525, IN COMPLEX WITH ADP

Yeo, H.J., Savvides, S.N., Herr, A.B., Lanka, E., Waksman, G., Midwest Center for Structural Genomics (MCSG)

(2000) Mol Cell 6: 1461-1472

Released	2001-01-24
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, B
Organism	Helicobacter pylori
Macromolecule	CAG-ALPHA

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1J2Y: Entity 1	Download File View File

Crystal structure of the type II 3-dehydroquinase

Lee, B.I., Kwak, J.E., Suh, S.W.

(2003) Proteins 51: 616-617

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.6 Å
Chain ID	A
Organism	Helicobacter pylori
Macromolecule	3-dehydroquinate dehydratase

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1J2Z: Entity 1	Download File View File

Crystal structure of UDP-N-acetylglucosamine acyltransferase

Lee, B.I., Suh, S.W.

(2003) Proteins 53: 772-774

Released	2004-01-27
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Helicobacter pylori
Macromolecule	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

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1J6X: Entity 1	Download File View File

CRYSTAL STRUCTURE OF HELICOBACTER PYLORI LUXS

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 2.38 Å
Chain IDs	A, B
Organism	Helicobacter pylori
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS

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1JI4: Entity 1	Download File View File

NAP protein from helicobacter pylori

Zanotti, G., Papinutto, E., Dundon, W.G., Battistutta, R., Seveso, M., Del Giudice, G., Rappuoli, R., Montecucco, C.

(2002) J Mol Biol 323: 125-130

Released	2002-10-09
Method	X-RAY DIFFRACTION 2.52 Å
Chain IDs	A, B, C, D, E More (12)
Organism	Helicobacter pylori
Macromolecule	NEUTROPHIL-ACTIVATING PROTEIN A

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1KLX: Entity 1	Download File View File

Helicobacter pylori cysteine rich protein B (hcpB)

Luethy, L., Gruetter, M.G., Mittl, P.R.E.

(2002) J Biol Chem 277: 10187-10193

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.95 Å
Chain ID	A
Organism	Helicobacter pylori
Macromolecule	Cysteine Rich Protein B

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1MW7: Entity 1	Download File View File

X-RAY STRUCTURE OF Y162_HELPY NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PR6

Kuzin, A., Shen, J., Keller, J.P., Xiao, R., Rost, B., Montelione, G., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2003-01-28
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Helicobacter pylori
Macromolecule	HYPOTHETICAL PROTEIN HP0162

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1NLY: Entity 1	Download File View File

Crystal structure of the traffic ATPase of the Helicobacter pylori type IV secretion system in complex with ATPgammaS

Savvides, S.N., Yeo, H.J., Beck, M.R., Blaesing, F., Lurz, R., Lanka, E., Buhrdorf, R., Fischer, W., Haas, R., Waksman, G.

(2003) EMBO J 22: 1969-1980

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Helicobacter pylori 26695
Macromolecule	virB11 homolog

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1NLZ: Entity 1	Download File View File

Crystal structure of unliganded traffic ATPase of the type IV secretion system of helicobacter pylori

Savvides, S.N., Yeo, H.J., Beck, M.R., Blaesing, F., Lurz, R., Lanka, E., Buhrdorf, R., Fischer, W., Haas, R., Waksman, G.

(2003) EMBO J 22: 1969-1980

Released	2003-05-06
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	A, B, C, D, E
Organism	Helicobacter pylori 26695
Macromolecule	virB11 homolog

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1OPX: Entity 1	Download File View File

Crystal structure of the traffic ATPase (HP0525) of the Helicobacter pylori type IV secretion system bound by sulfate

Savvides, S.N., Yeo, H.J., Beck, M.R., Blaesing, F., Lurz, R., Lanka, E., Buhrdorf, R., Fischer, W., Haas, R., Waksman, G.

(2003) EMBO J 22: 1969-1980

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Helicobacter pylori 26695
Macromolecule	virB11 homolog

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1OT0: Entity 1	Download File View File

Structure of Antimicrobial Peptide, HP (2-20) and its Analogues Derived from Helicobacter pylori, as Determined by 1H NMR Spectroscopy

Lee, K.H., Lee, D.G., Park, Y., Hahm, K.-S., Kim, Y.

To be published

Released	2004-09-07
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori
Macromolecule	50S ribosomal protein L1

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1OUV: Entity 1	Download File View File

Helicobacter cysteine rich protein C (HcpC)

Mittl, P.R., Luethy, L.

(2004) J Mol Biol 340: 829-841

Released	2004-03-30
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	conserved hypothetical secreted protein

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1P0G: Entity 1	Download File View File

Structure of Antimicrobial Peptide, HP (2-20) and its Analogues Derived from Helicobacter pylori, as Determined by 1H NMR Spectroscopy

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-05-20
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P0J: Entity 1	Download File View File

HP (2-20) Substitution ASP To TRP Modification In SDS-D25 Micelles

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-05-20
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P0L: Entity 1	Download File View File

HP (2-20) Substitution GLN To TRP Modification In SDS-D25 MICELLES

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-05-20
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P0O: Entity 1	Download File View File

HP (2-20) substitution of Trp for Gln and Asp at position 17 and 19 MODIFICATION IN SDS-D25 MICELLES

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-05-20
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P5K: Entity 1	Download File View File

HP (2-20) Substitution SER to LEU11 modification in sds-d25 micelles

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-06-03
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P5L: Entity 1	Download File View File

HP (2-20) Substitution PHE5 to SER modification in sds-d25 micelles

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-06-03
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1PU6: Entity 1	Download File View File

Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII)

Eichman, B.F., O'Rourke, E.J., Radicella, J.P., Ellenberger, T.

(2003) EMBO J 22: 4898-4909

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.64 Å
Chain IDs	A, B
Organism	Helicobacter pylori
Macromolecule	3-METHYLADENINE DNA GLYCOSYLASE

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1PU7: Entity 1	Download File View File

Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) bound to 3,9-dimethyladenine

Eichman, B.F., O'Rourke, E.J., Radicella, J.P., Ellenberger, T.

(2003) EMBO J 22: 4898-4909

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.93 Å
Chain IDs	A, B
Organism	Helicobacter pylori
Macromolecule	3-METHYLADENINE DNA GLYCOSYLASE

1 to 25 of 746 Polymer Entities

Page 1 of 30

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