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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "5141"

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Search Summary

This query matches 209 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (209)

Scientific Name of Source Organism

	Methanosarcina mazei Go1 (110)
	Methanosarcina mazei (84)
	Methanosarcina mazei JCM 9314 (14)
	Homo sapiens (2)
	synthetic construct (2)
	Magnetospirillum sp. XM-1 (1)
	Methanosarcina mazei S-6 (1)
	Spizellomyces punctatus (1)

Taxonomy

	Archaea (209)
	Eukaryota (3)
	other sequences (2)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (195)
	ELECTRON MICROSCOPY (8)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (205)
	RNA (3)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (15)
	1.5 - 2.0 (56)
	2.0 - 2.5 (85)
	2.5 - 3.0 (32)
	3.0 - 3.5 (12)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (35)
	2010 - 2014 (46)
	2015 - 2019 (35)
	2020 - 2024 (86)
	2025 - 2029 (4)

Enzyme Classification Name

	Ligases (64)
	Lyases (63)
	Transferases (19)
	Hydrolases (13)
	Oxidoreductases (6)
	Isomerases (3)
	Translocases (1)

Membrane Protein Annotation

	OPM (3)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (106)
	Cyclic (104)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a/b) (24)
	Artifacts (12)
	Alpha and beta proteins (a+b) (10)
	All beta proteins (9)
	All alpha proteins (8)

AllSelected

1 to 25 of 209 Polymer Entities

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1L0Q: Entity 1	Download File View File

Tandem YVTN beta-propeller and PKD domains from an archaeal surface layer protein

Jing, H., Takagi, J., Liu, J.-H., Lindgren, S., Zhang, R.-G., Joachimiak, A., Wang, J.-H., Springer, T.A.

(2002) Structure 10: 1453-1464

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B, C, D
Organism	Methanosarcina mazei S-6
Macromolecule	Surface layer protein

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1XN9: Entity 1	Download File View File

Solution Structure of Methanosarcina mazei Protein RPS24E: The Northeast Structural Genomics Consortium Target MaR11

Liu, G., Xiao, R., Parish, D., Ma, L., Sukumaran, D., Acton, T., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-12-14
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	30S ribosomal protein S24e

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1XUV: Entity 1	Download File View File

X-Ray Crystal Structure of Protein MM0500 from Methanosarcina mazei. Northeast Structural Genomics Consortium Target MaR10.

Forouhar, F., Abashidze, M., Ciano, M., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-11-23
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B, C
Organism	Methanosarcina mazei Go1
Macromolecule	hypothetical protein MM0500

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1YEZ: Entity 1	Download File View File

Solution structure of the conserved protein from the gene locus MM1357 of Methanosarcina mazei. Northeast Structural Genomics target MaR30.

Rossi, P., Aramini, J.M., Swapna, G.V.T., Huang, Y.P., Xiao, R., Ho, C.K., Ma, L.C., Acton, T.B., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-02-22
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei Go1
Macromolecule	MM1357

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1Z2Z: Entity 1	Download File View File

Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1

Forouhar, F., Yong, W., Ciano, M., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	Probable tRNA pseudouridine synthase D

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1ZQ7: Entity 1	Download File View File

X-Ray Crystal Structure of Protein Q8PZK8 from Methanosarcina mazei. Northeast Structural Genomics Consortium Target MaR9.

Kuzin, A.P., Abashidze, M., Vorobiev, S.M., Yong, W., Xiao, R., Ma, L.-C., Acton, T., Montelione, G.T., Tong, L., Hunt, J., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-05-31
Method	X-RAY DIFFRACTION 2.11 Å
Chain IDs	A, B, C, D
Organism	Methanosarcina mazei
Macromolecule	Hypothetical protein MM0484

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2C61: Entity 1	Download File View File

Crystal structure of the non-catalytic B subunit of A-type ATPase from M. mazei Go1

Schaefer, I., Bailer, S.M., Dueser, M., Boersch, M., Bernal, R.A., Grueber, G., Stock, D.

(2006) J Mol Biol 358: 725

Released	2006-12-11
Method	X-RAY DIFFRACTION 1.5 Å
Chain IDs	A, B
Organism	Methanosarcina mazei Go1
Macromolecule	A-TYPE ATP SYNTHASE NON-CATALYTIC SUBUNIT B

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2E3C: Entity 1	Download File View File

Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase

Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Mol Biol 378: 634-652

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.65 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2I1S: Entity 1	Download File View File

Crystal Structure of Protein of Unknown Function MM3350 from Methanosarcina mazei Go1

Nocek, B., Borovilos, M., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B
Organism	Methanosarcina mazei Go1
Macromolecule	Hypothetical protein

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2I5E: Entity 1	Download File View File

Crystal Structure of a Protein of Unknown Function MM2497 from Methanosarcina mazei Go1, Probable Nucleotidyltransferase

Tan, K., Du, J., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Methanosarcina mazei Go1
Macromolecule	Hypothetical protein MM_2497

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2KBN: Entity 1	Download File View File

Solution NMR structure of the OB domain (residues 67-166) of MM0293 from Methanosarcina mazei. Northeast Structural Genomics Consortium target MaR214a.

Ramelot, T.A., Ding, K., Magliqui, M., Jiang, M., Ciccosanti, C., Xiao, R., Lui, J., Everett, J.K., Swapna, G., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2009-07-07
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Conserved protein

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2KEN: Entity 1	Download File View File

Solution NMR structure of the OB domain (residues 67-166) of MM0293 from Methanosarcina mazei. Northeast Structural Genomics Consortium target MaR214a.

To be published

Released	2009-02-10
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Conserved protein

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2KZW: Entity 1	Download File View File

Solution NMR Structure of Q8PSA4 from Methanosarcina mazei, Northeast Structural Genomics Consortium Target MaR143A

Mills, J.L., Eletsky, A., Lee, H., Lee, D., Ciccosanti, C., Hamilton, K., Acton, T.B., Xiao, R., Everett, J.K., Prestegard, J.H., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2010-08-25
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Uncharacterized protein

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2NR4: Entity 1	Download File View File

Crystal structure of FMN-bound protein MM1853 from Methanosarcina mazei, Pfam DUF447

Bonanno, J.B., Gilmore, J., Bain, K.T., Lau, C., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-11-07
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	Conserved hypothetical protein

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2OV6: Entity 1	Download File View File

The NMR structure of subunit F of the Methanogenic A1Ao ATP synthase and its interaction with the nucleotide-binding subunit B

Gayen, S., Subramanian, V., Biukovic, G.

(2007) Biochemistry 46: 11684-11694

Released	2007-12-25
Method	SOLUTION NMR
Chain ID	A
Organism	Methanosarcina mazei Go1
Macromolecule	V-type ATP synthase subunit F

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2Q2E: Entity 1	Download File View File

Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei

Corbett, K.D., Benedetti, P., Berger, J.M.

(2007) Nat Struct Mol Biol 14: 611-619

Released	2007-07-10
Method	X-RAY DIFFRACTION 4 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Type II DNA topoisomerase VI subunit A

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2Q2E: Entity 2	Download File View File

Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei

Corbett, K.D., Benedetti, P., Berger, J.M.

(2007) Nat Struct Mol Biol 14: 611-619

Released	2007-07-10
Method	X-RAY DIFFRACTION 4 Å
Chain ID	B
Organism	Methanosarcina mazei
Macromolecule	Type 2 DNA topoisomerase 6 subunit B

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2Q7E: Entity 1	Download File View File

The structure of pyrrolysyl-tRNA synthetase bound to an ATP analogue

Kavran, J.M., Steitz, T.A.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2Q7G: Entity 1	Download File View File

Pyrrolysine tRNA Synthetase bound to a pyrrolysine analogue (cyc) and ATP

Kavran, J.M., Steitz, T.A.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.9 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2Q7H: Entity 1	Download File View File

Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate

Kavran, J.M., Steitz, T.A.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

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2RKW: Entity 1	Download File View File

Intermediate position of ATP on its trail to the binding pocket inside the subunit B mutant R416W of the energy converter A1Ao ATP synthase

Kumar, A., Manimekalai, M.S.S., Balakrishna, A.M., Hunke, C., Gruber, G.

(2009) Proteins 75: 807-819

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.81 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	V-type ATP synthase beta chain

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2XR1: Entity 1	Download File View File

DIMERIC ARCHAEAL CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR WITH N-TERMINAL KH DOMAINS (KH-CPSF) FROM METHANOSARCINA MAZEI

Mir-Montazeri, B., Ammelburg, M., Forouzan, D., Lupas, A.N., Hartmann, M.D.

(2011) J Struct Biol 173: 191

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.59 Å
Chain IDs	A, B
Organism	Methanosarcina mazei
Macromolecule	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100 KD SUBUNIT

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2XRY: Entity 1	Download File View File

X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei

Kiontke, S., Geisselbrecht, Y., Pokorny, R., Carell, T., Batschauer, A., Essen, L.O.

(2011) EMBO J 30: 4437

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Methanosarcina mazei Go1
Macromolecule	DEOXYRIBODIPYRIMIDINE PHOTOLYASE

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2XRZ: Entity 1	Download File View File

X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei in complex with intact CPD-lesion

Kiontke, S., Geisselbrecht, Y., Pokorny, R., Carell, T., Batschauer, A., Essen, L.O.

(2011) EMBO J 30: 4437

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Methanosarcina mazei Go1
Macromolecule	DEOXYRIBODIPYRIMIDINE PHOTOLYASE

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2ZCE: Entity 1	Download File View File

Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with pyrrolysine and an ATP analogue

Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Mol Biol 378: 634-652

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase

1 to 25 of 209 Polymer Entities

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