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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "571"

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Search Summary

This query matches 106 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (106)

Scientific Name of Source Organism

	Klebsiella oxytoca (105)
	Klebsiella oxytoca 10-5243 (1)

Taxonomy

Bacteria (106)

Experimental Method

	X-RAY DIFFRACTION (78)
	ELECTRON MICROSCOPY (24)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (89)
	DNA (11)
	RNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (42)
	2.0 - 2.5 (19)
	2.5 - 3.0 (17)
	3.0 - 3.5 (10)
	3.5 - 4.0 (12)
	> 4.5 (1)

Release Date

	2000 - 2004 (21)
	2005 - 2009 (7)
	2010 - 2014 (6)
	2015 - 2019 (24)
	2020 - 2024 (47)
	2025 - 2029 (1)

Enzyme Classification Name

	Lyases (39)
	Hydrolases (7)
	Oxidoreductases (6)

Membrane Protein Annotation

	mpstruc (6)
	MemProtMD (5)
	PDBTM (5)
	OPM (3)

Symmetry Type

	Cyclic (58)
	Asymmetric (50)
	Dihedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (27)
	All alpha proteins (11)
	Artifacts (4)
	Multi-domain proteins (alpha and beta) (3)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 106 Polymer Entities

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1DIO: Entity 1	Download File View File

DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Tobimatsu, T., Toraya, T., Suto, K., Morimoto, Y., Yasuoka, N.

(1999) Structure 7: 997-1008

Released	2000-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	PROTEIN (DIOL DEHYDRATASE)

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1DIO: Entity 2	Download File View File

DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Tobimatsu, T., Toraya, T., Suto, K., Morimoto, Y., Yasuoka, N.

(1999) Structure 7: 997-1008

Released	2000-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	PROTEIN (DIOL DEHYDRATASE)

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1DIO: Entity 3	Download File View File

DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Tobimatsu, T., Toraya, T., Suto, K., Morimoto, Y., Yasuoka, N.

(1999) Structure 7: 997-1008

Released	2000-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	PROTEIN (DIOL DEHYDRATASE)

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1EEX: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

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1EEX: Entity 2	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

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1EEX: Entity 3	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

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1EGM: Entity 1	Download File View File

CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

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1EGM: Entity 2	Download File View File

CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

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1EGM: Entity 3	Download File View File

CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

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1EGV: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.75 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

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1EGV: Entity 2	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.75 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1EGV: Entity 3	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.75 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

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1IWB: Entity 1	Download File View File

Crystal structure of diol dehydratase

Shibata, N., Masuda, J., Morimoto, Y., Yasuoka, N., Toraya, T.

(2002) Biochemistry 41: 12607-12617

Released	2003-05-01
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	DIOL DEHYDRATASE alpha chain

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1IWB: Entity 2	Download File View File

Crystal structure of diol dehydratase

Shibata, N., Masuda, J., Morimoto, Y., Yasuoka, N., Toraya, T.

(2002) Biochemistry 41: 12607-12617

Released	2003-05-01
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	DIOL DEHYDRATASE beta chain

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1IWB: Entity 3	Download File View File

Crystal structure of diol dehydratase

Shibata, N., Masuda, J., Morimoto, Y., Yasuoka, N., Toraya, T.

(2002) Biochemistry 41: 12607-12617

Released	2003-05-01
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	DIOL DEHYDRATASE gamma chain

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1UC4: Entity 1	Download File View File

Structure of diol dehydratase complexed with (S)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biol Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase alpha subunit

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1UC4: Entity 2	Download File View File

Structure of diol dehydratase complexed with (S)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biol Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase beta subunit

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1UC4: Entity 3	Download File View File

Structure of diol dehydratase complexed with (S)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biol Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase gamma subunit

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1UC5: Entity 1	Download File View File

Structure of diol dehydratase complexed with (R)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biol Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase alpha subunit

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1UC5: Entity 2	Download File View File

Structure of diol dehydratase complexed with (R)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biol Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase beta subunit

Explore in 3D

1UC5: Entity 3	Download File View File

Structure of diol dehydratase complexed with (R)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biol Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase gamma subunit

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1ZRR: Entity 1	Download File View File

Residual Dipolar Coupling Refinement of Acireductone Dioxygenase from Klebsiella

Pochapsky, T.C., Pochapsky, S.S., Ju, T., Hoefler, C., Liang, J.

(2006) J Biomol NMR 34: 117-127

Released	2005-12-06
Method	SOLUTION NMR
Chain ID	A
Organism	Klebsiella oxytoca
Macromolecule	E-2/E-2' protein

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2D0O: Entity 1	Download File View File

Structure of diol dehydratase-reactivating factor complexed with ADP and Mg2+

Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.

(2005) Structure 13: 1745-1754

Released	2006-02-28
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, C
Organism	Klebsiella oxytoca
Macromolecule	diol dehydratase-reactivating factor large subunit

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2D0O: Entity 2	Download File View File

Structure of diol dehydratase-reactivating factor complexed with ADP and Mg2+

Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.

(2005) Structure 13: 1745-1754

Released	2006-02-28
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	B, D
Organism	Klebsiella oxytoca
Macromolecule	diol dehydratase-reactivating factor small subunit

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2D0P: Entity 1	Download File View File

Structure of diol dehydratase-reactivating factor in nucleotide free form

Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.

(2005) Structure 13: 1745-1754

Released	2006-02-28
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	A, C
Organism	Klebsiella oxytoca
Macromolecule	diol dehydratase-reactivating factor large subunit

1 to 25 of 106 Polymer Entities

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