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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "71421"

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Search Summary

This query matches 157 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (157)

Scientific Name of Source Organism

	Haemophilus influenzae Rd KW20 (156)
	Human immunodeficiency virus 1 (2)
	Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (1)

Taxonomy

	Bacteria (157)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (155)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (154)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (59)
	2.0 - 2.5 (56)
	2.5 - 3.0 (25)
	3.0 - 3.5 (8)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (17)
	2005 - 2009 (6)
	2010 - 2014 (19)
	2015 - 2019 (88)
	2020 - 2024 (27)

Enzyme Classification Name

	Transferases (75)
	Hydrolases (23)
	Ligases (14)
	Oxidoreductases (11)
	Lyases (7)
	Isomerases (1)

Membrane Protein Annotation

	MemProtMD (3)
	PDBTM (3)
	OPM (1)
	mpstruc (1)

Symmetry Type

	Cyclic (122)
	Asymmetric (38)
	Dihedral (9)

SCOP Classification

	Alpha and beta proteins (a/b) (78)
	Alpha and beta proteins (a+b) (22)
	Artifacts (39)
	All beta proteins (12)

AllSelected

1 to 25 of 157 Polymer Entities

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1GQZ: Entity 1	Download File View File

Refinement of Haemophilus influenzae Diaminopimelate epimerase at 1.7A

Roper, D.I., Huyton, T., Turkenburg, J.P.

(2004) Acta Crystallogr D Biol Crystallogr 60: 397-400

Released	2003-06-12
Method	X-RAY DIFFRACTION 1.75 Å
Chain ID	A
Organism	Haemophilus influenzae Rd KW20
Macromolecule	DIAMINOPIMELATE EPIMERASE

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1IM8: Entity 1	Download File View File

Crystal structure of YecO from Haemophilus influenzae (HI0319), a methyltransferase with a bound S-adenosylhomocysteine

Lim, K., Zhang, H., Tempczyk, A., Bonander, N., Toedt, J., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2001) Proteins 45: 397-407

Released	2001-11-07
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Haemophilus influenzae Rd KW20
Macromolecule	YecO

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1J7G: Entity 1	Download File View File

Structure of YihZ from Haemophilus influenzae (HI0670), a D-Tyr-tRNA(Tyr) deacylase

Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2003) J Biol Chem 278: 13496-13502

Released	2003-04-22
Method	X-RAY DIFFRACTION 1.64 Å
Chain ID	A
Organism	Haemophilus influenzae Rd KW20
Macromolecule	D-tyrosyl-tRNA(Tyr) deacylase

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1J85: Entity 1	Download File View File

Structure of YibK from Haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA (guanosine-2'-O-) methyltransferase (SpoU)

Lim, K., Zhang, H., Toedt, J., Tempcyzk, A., Krajewski, W., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2003) Proteins 51: 56-67

Released	2003-02-25
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Haemophilus influenzae Rd KW20
Macromolecule	YibK

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1J8B: Entity 1	Download File View File

Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function

Lim, K., Tempcyzk, A., Toedt, J., Parsons, J.F., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2003) Proteins 50: 375-379

Released	2003-01-14
Method	X-RAY DIFFRACTION 1.75 Å
Chain ID	A
Organism	Haemophilus influenzae Rd KW20
Macromolecule	YbaB

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1J8D: Entity 1	Download File View File

Structure Of the metal-free form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)

Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 46: 393-404

Released	2002-02-27
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B, C, D
Organism	Haemophilus influenzae Rd KW20
Macromolecule	deoxy-D-mannose-octulosonate 8-phosphate phosphatase

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1JOE: Entity 1	Download File View File

Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae

Chen, C.C.H., Parsons, J.F., Lim, K., Lehmann, C., Tempczyk, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

To be published

Released	2001-08-08
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B, C, D
Organism	Haemophilus influenzae Rd KW20
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN

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1K1E: Entity 1	Download File View File

Structure Of the cobalt-bound form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)

Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 46: 393-404

Released	2002-02-27
Method	X-RAY DIFFRACTION 1.67 Å
Chain IDs	A, B, C, D, E More (12)
Organism	Haemophilus influenzae Rd KW20
Macromolecule	deoxy-D-mannose-octulosonate 8-phosphate phosphatase

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1KYI: Entity 1	Download File View File

HslUV (H. influenzae)-NLVS Vinyl Sulfone Inhibitor Complex

Sousa, M.C., Kessler, B.M., Overkleeft, H.S., McKay, D.B.

(2002) J Mol Biol 318: 779-785

Released	2002-05-15
Method	X-RAY DIFFRACTION 3.1 Å
Chain IDs	A, B, C, D, E More (12)
Organism	Haemophilus influenzae Rd KW20
Macromolecule	ATP-dependent hsl protease ATP-binding subunit hslU

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1KYI: Entity 2	Download File View File

HslUV (H. influenzae)-NLVS Vinyl Sulfone Inhibitor Complex

Sousa, M.C., Kessler, B.M., Overkleeft, H.S., McKay, D.B.

(2002) J Mol Biol 318: 779-785

Released	2002-05-15
Method	X-RAY DIFFRACTION 3.1 Å
Chain IDs	G, H, I, J, K More (12)
Organism	Haemophilus influenzae Rd KW20
Macromolecule	ATP-dependent protease hslV

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1OFH: Entity 1	Download File View File

Asymmetric complex between HslV and I-domain deleted HslU (H. influenzae)

Kwon, A.R., Kessler, B.M., Overkleeft, H.S., McKay, D.B.

(2003) J Mol Biol 330: 185

Released	2003-07-03
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, B, C
Organism	Haemophilus influenzae Rd KW20
Macromolecule	ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU

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1OFH: Entity 2	Download File View File

Asymmetric complex between HslV and I-domain deleted HslU (H. influenzae)

Kwon, A.R., Kessler, B.M., Overkleeft, H.S., McKay, D.B.

(2003) J Mol Biol 330: 185

Released	2003-07-03
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	D [auth G], E [auth H], F [auth I], G [auth L], H [auth M]
Organism	Haemophilus influenzae Rd KW20
Macromolecule	ATP-DEPENDENT PROTEASE HSLV

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1OFI: Entity 1	Download File View File

Asymmetric complex between HslV and I-domain deleted HslU (H. influenzae)

Kwon, A.R., Kessler, B.M., Overkleeft, H.S., McKay, D.B.

(2003) J Mol Biol 330: 185

Released	2003-07-03
Method	X-RAY DIFFRACTION 3.2 Å
Chain IDs	A, B, C
Organism	Haemophilus influenzae Rd KW20
Macromolecule	ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU

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1OFI: Entity 2	Download File View File

Asymmetric complex between HslV and I-domain deleted HslU (H. influenzae)

Kwon, A.R., Kessler, B.M., Overkleeft, H.S., McKay, D.B.

(2003) J Mol Biol 330: 185

Released	2003-07-03
Method	X-RAY DIFFRACTION 3.2 Å
Chain IDs	D [auth G], E [auth H], F [auth I], G [auth L], H [auth M]
Organism	Haemophilus influenzae Rd KW20
Macromolecule	ATP-DEPENDENT PROTEASE HSLV

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1PQP: Entity 1	Download File View File

Crystal Structure of the C136S Mutant of Aspartate Semialdehyde Dehydrogenase from Haemophilus influenzae Bound with Aspartate Semialdehyde and Phosphate

Blanco, J., Moore, R.A., Faehnle, C.R., Viola, R.E.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1388-1395

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.06 Å
Chain ID	A
Organism	Haemophilus influenzae Rd KW20
Macromolecule	Aspartate-semialdehyde dehydrogenase

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1PQU: Entity 1	Download File View File

Crystal Structure of the H277N Mutant of Aspartate Semialdehyde Dehydrogenase from Haemophilus influenzae Bound with NADP, S-methyl cysteine sulfoxide and cacodylate

Blanco, J., Moore, R.A., Viola, R.E.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1388-1395

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.92 Å
Chain IDs	A, B, C, D
Organism	Haemophilus influenzae Rd KW20
Macromolecule	Aspartate-semialdehyde dehydrogenase

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1Q2X: Entity 1	Download File View File

Crystal Structure of the E243D Mutant of Aspartate Semialdehyde Dehydrogenase from Haemophilus influenzae bound with substrate aspartate semialdehyde

Blanco, J., Moore, R.A., Faehnle, C.R., Coe, D.M., Viola, R.E.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1388-1395

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.05 Å
Chain IDs	A, B
Organism	Haemophilus influenzae Rd KW20
Macromolecule	Aspartate-semialdehyde dehydrogenase

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1Y7L: Entity 2	Download File View File

O-Acetylserine Sulfhydrylase Complex

Huang, B., Vetting, M.W., Roderick, S.L.

(2005) J Bacteriol 187: 3201-3205

Released	2005-04-26
Method	X-RAY DIFFRACTION 1.55 Å
Chain ID	B [auth P]
Organism	Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Macromolecule	decamer fragment of Serine acetyltransferase

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2E52: Entity 1	Download File View File

Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolution

Watanabe, N., Sato, C., Tanaka, I.

(2009) Acta Crystallogr D Biol Crystallogr 65: 1326-1333

Released	2007-12-18
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B [auth C], C [auth B], D
Organism	Haemophilus influenzae Rd KW20
Macromolecule	Type II restriction enzyme HindIII

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3A4K: Entity 1	Download File View File

Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA and divalent cations at 2.17 angstrom resolution

Watanabe, N., Sato, C., Takasaki, Y., Tanaka, I.

(2009) Acta Crystallogr D Biol Crystallogr 65: 1326-1333

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.17 Å
Chain IDs	C [auth B], A, B [auth C], D
Organism	Haemophilus influenzae Rd KW20
Macromolecule	Type-2 restriction enzyme HindIII

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3AXZ: Entity 1	Download File View File

Crystal structure of Haemophilus influenzae TrmD in complex with adenosine

Yoshida, K., Goto-Ito, S., Ito, T., Hou, Y.M., Yokoyama, S.

(2011) RNA 17: 1236-1246

Released	2011-08-17
Method	X-RAY DIFFRACTION 2.25 Å
Chain ID	A
Organism	Haemophilus influenzae Rd KW20
Macromolecule	tRNA (guanine-N(1)-)-methyltransferase

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3BJK: Entity 1	Download File View File

Crystal structure of HI0827, a hexameric broad specificity acyl-coenzyme A thioesterase: The Asp44Ala mutant enzyme

Willis, M.A., Herzberg, O., Structure 2 Function Project (S2F)

(2008) Biochemistry 47: 2797-2805

Released	2008-02-26
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	A, B, C, D, E
Organism	Haemophilus influenzae Rd KW20
Macromolecule	Acyl-CoA thioester hydrolase HI0827

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3CKM: Entity 1	Download File View File

LpoA (YraM) C-domain from Haemophilus influenzae, a regulator of PBP1A

Vijayalakshmi, J., Saper, M.A.

(2008) Proteins 73: 204-217

Released	2008-05-13
Method	X-RAY DIFFRACTION 1.35 Å
Chain ID	A
Organism	Haemophilus influenzae Rd KW20
Macromolecule	YRAM (HI1655)

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3ISZ: Entity 1	Download File View File

Crystal structure of mono-zinc form of succinyl-diaminopimelate desuccinylase from Haemophilus influenzae

Nocek, B.P., Gillner, D.M., Holz, R.C., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2010) J Mol Biol 397: 617-626

Released	2009-11-10
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Haemophilus influenzae Rd KW20
Macromolecule	Succinyl-diaminopimelate desuccinylase

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3SF0: Entity 1	Download File View File

Structure of Recombinant Haemophilus Influenzae e(P4) Acid Phosphatase mutant D64N complexed with 5'AMP

Singh, H.

(2011) FEBS J 278: 4374-4381

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.35 Å
Chain ID	A
Organism	Haemophilus influenzae Rd KW20
Macromolecule	Lipoprotein E

1 to 25 of 157 Polymer Entities

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