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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Helicobacter pylori G27"

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Helicobacter pylori G27 (38)
	Homo sapiens (3)
	Lama glama (2)
	Helicobacter pylori (1)
	unidentified (1)

Taxonomy

	Bacteria (38)
	Eukaryota (4)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (37)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (38)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (10)
	2.0 - 2.5 (12)
	2.5 - 3.0 (10)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (11)
	2015 - 2019 (20)
	2020 - 2024 (5)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (3)
	Oxidoreductases (3)
	Ligases (2)
	Isomerases (1)
	Lyases (1)
	Transferases (1)

Membrane Protein Annotation

	mpstruc (3)
	OPM (2)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (24)
	Cyclic (15)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	Alpha and beta proteins (a+b) (2)
	Artifacts (3)
	All beta proteins (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 38 Structures

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2Y3Y \| pdb_00002y3y	Download File View File

Holo-Ni(II) HpNikR is a symmetric tetramer containing four canonic square-planar Ni(II) ions at physiological pH

Benini, S., Cianci, M., Ciurli, S.

(2011) Dalton Trans 40: 7831

Released	2011-08-17
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Helicobacter pylori G27 unidentified
Macromolecule	PUTATIVE NICKEL-RESPONSIVE REGULATOR (protein) UNDECAPEPTIDE-GSSSGSASGAG (protein)
Unique Ligands	EPE, NI, PEG

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3QBU \| pdb_00003qbu	Download File View File

Crystal structure of putative peptidoglycan deactelyase (HP0310) from Helicobacter pylori

Shaik, M.M., Cendron, L., Percudani, R., Zanotti, G.

(2011) PLoS One 6: e19207-e19207

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.5701 Å
Organisms	Helicobacter pylori G27
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	ZN

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3SXP \| pdb_00003sxp	Download File View File

Crystal Structure of Helicobacter pylori ADP-L-glycero-D-manno-heptose-6-epimerase (rfaD, HP0859)

Shaik, M.M., Zanotti, G., Cendron, L.

(2011) Biochim Biophys Acta 1814: 1641-1647

Released	2012-02-08
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Helicobacter pylori G27
Macromolecule	ADP-L-glycero-D-mannoheptose-6-epimerase (protein)
Unique Ligands	NAD

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4INO \| pdb_00004ino	Download File View File

The crystal structure of Helicobacter pylori Ceue (HP1561)

Shaik, M.M., Cendron, L., Zanotti, G.

(2014) Mol Microbiol 91: 724-735

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Helicobacter pylori G27
Macromolecule	Nickel (II) ABC transporter, periplasmic nickel-binding protein (protein)

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4INP \| pdb_00004inp	Download File View File

The crystal structure of Helicobacter pylori Ceue (HP1561) with Ni(II) bound

Shaik, M.M., Cendron, L., Zanotti, G.

(2014) Mol Microbiol 91: 724-735

Released	2014-01-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Helicobacter pylori G27
Macromolecule	Iron (III) ABC transporter, periplasmic iron-binding protein (protein)
Unique Ligands	ACT, NI

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4LS3 \| pdb_00004ls3	Download File View File

THE crystal STRUCTURE OF HELICOBACTER PYLORI CEUE(HP1561)/NI-HIS COMPL

Salamina, M., Shaik, M.M., Cendron, L., Zanotti, G.

(2014) Mol Microbiol 91: 724-735

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Helicobacter pylori G27
Macromolecule	Nickel (III) ABC transporter, periplasmic iron-bindin gprotein (protein)
Unique Ligands	HIS, NI

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4LY4 \| pdb_00004ly4	Download File View File

Crystal structure of peptidoglycan deacetylase (HP0310) with Zinc from Helicobacter pylori

Shaik, M.M., Zanotti, G.

(2014) Proteins 82: 1311-1318

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.199 Å
Organisms	Helicobacter pylori G27
Macromolecule	peptidoglycan deacetylase (protein)
Unique Ligands	ZN

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4WCK \| pdb_00004wck	Download File View File

Crystal Structure of apo Cell Shape Determinant protein Csd4 from Helicobacter pylori

Chan, A.C., Murphy, M.E.

(2015) J Biological Chem 290: 3622-3638

Released	2014-12-24
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Helicobacter pylori G27
Macromolecule	Conserved hypothetical secreted protein (protein)
Unique Ligands	API, IOD

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4WCL \| pdb_00004wcl	Download File View File

Crystal Structure of product bound Cell Shape Determinant protein Csd4 from Helicobacter pylori

Chan, A.C., Murphy, M.E.

(2015) J Biological Chem 290: 3622-3638

Released	2014-12-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Helicobacter pylori G27
Macromolecule	Conserved hypothetical secreted protein (protein)
Unique Ligands	API, IOD, NA, ZN

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4WCM \| pdb_00004wcm	Download File View File

Crystal Structure of Cell Shape Determinant protein Csd4 Gln46His variant from Helicobacter pylori

Chan, A.C., Murphy, M.E.

(2015) J Biological Chem 290: 3622-3638

Released	2014-12-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Helicobacter pylori G27
Macromolecule	Conserved hypothetical secreted protein (protein)
Unique Ligands	API, IOD, PO4, ZN

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4WCN \| pdb_00004wcn	Download File View File

Crystal Structure of Tripeptide bound Cell Shape Determinant Csd4 protein from Helicobacter pylori

Chan, A.C., Murphy, M.E.

(2015) J Biological Chem 290: 3622-3638

Released	2014-12-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Helicobacter pylori G27
Macromolecule	Conserved hypothetical secreted protein (protein)
Unique Ligands	3KS, IOD, NA, ZN

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4XFW \| pdb_00004xfw	Download File View File

Crystal structure of the monoclinic form of alpha-carbonic anhydrase from the human pathogen Helicobacter pylori

Compostella, M.E., Vallese, F., Berto, P., Zanotti, G.

(2015) Acta Crystallogr F Struct Biol Commun 71: 1005-1011

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.517 Å
Organisms	Helicobacter pylori G27
Macromolecule	Alpha-carbonic anhydrase (protein)
Unique Ligands	ACY, CL, SO4, ZN

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4ZZK \| pdb_00004zzk	Download File View File

Crystal structure of truncated FlgD (monoclinic form) from the human pathogen Helicobacter pylori

Pulic, I., Cendron, L., Salamina, M., Matkovic-Calogovic, D., Zanotti, G.

(2016) J Struct Biol 194: 147-155

Released	2016-02-24
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Helicobacter pylori G27
Macromolecule	Basal-body rod modification protein FlgD (protein)

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5D2R \| pdb_00005d2r	Download File View File

Inhibitor Bound Cell Shape Determinant Protein Csd4 from Helicobacter pylori

Chan, A.C., Murphy, M.E.

(2016) ACS Chem Biol 11: 981-991

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Helicobacter pylori G27
Macromolecule	Conserved hypothetical secreted protein (protein)
Unique Ligands	56W, IOD, ZN

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5LP2 \| pdb_00005lp2	Download File View File

Adhesin domain of the type 1 HopQ of Helicobacter pylori strain G27

Moonens, K., Kruse, T., Gerhard, M., Remaut, H.

(2016) Nat Microbiol 2: 16189-16189

Released	2016-10-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Helicobacter pylori G27
Macromolecule	HopQ (protein)

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5NPY \| pdb_00005npy	Download File View File

Crystal structure of Helicobacter pylori flagellar hook protein FlgE2

Loconte, V., Zanotti, G., Kekez, I., Matkovic-Calogovic, D.

(2017) FEBS J 284: 4328-4342

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.292 Å
Organisms	Helicobacter pylori G27
Macromolecule	Flagellar basal body protein (protein)
Unique Ligands	144

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5VC2 \| pdb_00005vc2	Download File View File

Crystal structure of a serine hydroxymethyltransferase from Helicobacter pylori

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Helicobacter pylori G27
Macromolecule	Serine hydroxymethyltransferase (protein)

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6APE \| pdb_00006ape	Download File View File

Crystal Structure of Bifunctional protein FolD from Helicobacter pylori

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2017-09-13
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Helicobacter pylori G27
Macromolecule	Bifunctional protein FolD (protein)
Unique Ligands	GOL, NA

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6B1P \| pdb_00006b1p	Download File View File

Crystal Structure of Glutamate-tRNA Synthetase from Helicobacter pylori

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2017-09-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Helicobacter pylori G27
Macromolecule	Glutamate--tRNA ligase 1 (protein)
Unique Ligands	EDO

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6B8S \| pdb_00006b8s	Download File View File

Crystal Structure of Dihydroorotate Dehydrogenase from Helicobacter pylori with bound FMN

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2025) Acta Crystallogr F Struct Biol Commun 81: 108-117

Released	2017-11-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Helicobacter pylori G27
Macromolecule	Dihydroorotate dehydrogenase (quinone) (protein)
Unique Ligands	FMN, PGE

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6BYQ \| pdb_00006byq	Download File View File

Crystal structure of Tyrosine-tRNA ligase from Helicobacter pylori G27

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2018-03-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Helicobacter pylori G27
Macromolecule	Tyrosine--tRNA ligase (protein)
Unique Ligands	IPA

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6CK0 \| pdb_00006ck0	Download File View File

Crystal Structure of Biotin Acetyl Coenzyme A Carboxylase Synthetase from Helicobacter pylori with bound Biotinylated ATP

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2025) Acta Crystallogr F Struct Biol Commun 81: 11-18

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Helicobacter pylori G27
Macromolecule	Biotin acetyl coenzyme A carboxylase synthetase (protein)
Unique Ligands	EDO, F5D, SO4

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6GBG \| pdb_00006gbg	Download File View File

Helicobacter pylori adhesin HopQ type I bound to the N-terminal domain of human CEACAM1

Moonens, K., Kruse, T., Gerhard, M., Remaut, H.

(2018) EMBO J 37:

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Helicobacter pylori G27 Homo sapiens
Macromolecule	Carcinoembryonic antigen-related cell adhesion molecule 1 (protein) Outer membrane protein (protein)
Unique Ligands	BR