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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Ignavibacterium album JCM 16511"

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This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

Ignavibacterium album JCM 16511 (12)

Taxonomy

Bacteria (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (2)

Release Date

2020 - 2024 (12)

Symmetry Type

Cyclic (12)

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1 to 12 of 12 Structures

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7VKW \| pdb_00007vkw	Download File View File

The apo structure of beta-1,2-glucosyltransferase from Ignavibacterium album

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)

Explore in 3D

7VKX \| pdb_00007vkx	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with glucose

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)
Unique Ligands	BGC, CA

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7VKY \| pdb_00007vky	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with sophorose

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC, GLC

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7VKZ \| pdb_00007vkz	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with 1-Deoxynojirimycin

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)
Unique Ligands	CA, NOJ

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7VL0 \| pdb_00007vl0	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with p-nitrophenyl-alpha-D-glucopyranoside

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	CA, PNG

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7VL1 \| pdb_00007vl1	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with methyl alpha-D-glucoside

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)
Unique Ligands	CA, GYP

Explore in 3D

7VL2 \| pdb_00007vl2	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with ethyl alpha-D-Glucoside

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)
Unique Ligands	BW3, CA

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7VL3 \| pdb_00007vl3	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with phenyl alpha-D-glucoside

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)
Unique Ligands	7OL, CA

Explore in 3D

7VL4 \| pdb_00007vl4	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with methyl beta-D-glucoside

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)
Unique Ligands	CA, MGL

Explore in 3D

7VL5 \| pdb_00007vl5	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with n-octyl-beta-D-glucoside

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	BOG, CA

Explore in 3D

7VL6 \| pdb_00007vl6	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with arbutin

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)
Unique Ligands	7OQ, CA

Explore in 3D

7VL7 \| pdb_00007vl7	Download File View File

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with esculin

Kobayashi, K., Shimizu, H., Tanaka, N., Kuramochi, K., Nakai, H., Nakajima, M., Taguchi, H.

(2022) J Biological Chem 298: 101606-101606

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Ignavibacterium album JCM 16511
Macromolecule	beta-1,2-glucosyltransferase (protein)
Unique Ligands	7OU, CA

1 to 12 of 12 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

7VKW | pdb_00007vkw

The apo structure of beta-1,2-glucosyltransferase from Ignavibacterium album

7VKX | pdb_00007vkx

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with glucose

7VKY | pdb_00007vky

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with sophorose

7VKZ | pdb_00007vkz

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with 1-Deoxynojirimycin

7VL0 | pdb_00007vl0

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with p-nitrophenyl-alpha-D-glucopyranoside

7VL1 | pdb_00007vl1

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with methyl alpha-D-glucoside

7VL2 | pdb_00007vl2

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with ethyl alpha-D-Glucoside

7VL3 | pdb_00007vl3

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with phenyl alpha-D-glucoside

7VL4 | pdb_00007vl4

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with methyl beta-D-glucoside

7VL5 | pdb_00007vl5

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with n-octyl-beta-D-glucoside

7VL6 | pdb_00007vl6

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with arbutin

7VL7 | pdb_00007vl7

The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with esculin

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Structure Determination Methodology

Scientific Name of Source Organism

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7VKW | pdb_00007vkw

7VKX | pdb_00007vkx

7VKY | pdb_00007vky

7VKZ | pdb_00007vkz

7VL0 | pdb_00007vl0

7VL1 | pdb_00007vl1

7VL2 | pdb_00007vl2

7VL3 | pdb_00007vl3

7VL4 | pdb_00007vl4

7VL5 | pdb_00007vl5

7VL6 | pdb_00007vl6

7VL7 | pdb_00007vl7