RCSB PDB: Search

1L0Q \| pdb_00001l0q	Download File View File

Tandem YVTN beta-propeller and PKD domains from an archaeal surface layer protein

Jing, H., Takagi, J., Liu, J.-H., Lindgren, S., Zhang, R.-G., Joachimiak, A., Wang, J.-H., Springer, T.A.

(2002) Structure 10: 1453-1464

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanosarcina mazei S-6
Macromolecule	Surface layer protein (protein)

Explore in 3D

1XN9 \| pdb_00001xn9	Download File View File

Solution Structure of Methanosarcina mazei Protein RPS24E: The Northeast Structural Genomics Consortium Target MaR11

Liu, G., Xiao, R., Parish, D., Ma, L., Sukumaran, D., Acton, T., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-12-14
Method	SOLUTION NMR
Organisms	Methanosarcina mazei
Macromolecule	30S ribosomal protein S24e (protein)

Explore in 3D

1XUV \| pdb_00001xuv	Download File View File

X-Ray Crystal Structure of Protein MM0500 from Methanosarcina mazei. Northeast Structural Genomics Consortium Target MaR10.

Forouhar, F., Abashidze, M., Ciano, M., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-11-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	hypothetical protein MM0500 (protein)

Explore in 3D

1YEZ \| pdb_00001yez	Download File View File

Solution structure of the conserved protein from the gene locus MM1357 of Methanosarcina mazei. Northeast Structural Genomics target MaR30.

Rossi, P., Aramini, J.M., Swapna, G.V.T., Huang, Y.P., Xiao, R., Ho, C.K., Ma, L.C., Acton, T.B., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-02-22
Method	SOLUTION NMR
Organisms	Methanosarcina mazei Go1
Macromolecule	MM1357 (protein)

Explore in 3D

1Z2Z \| pdb_00001z2z	Download File View File

Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1

Forouhar, F., Yong, W., Ciano, M., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanosarcina mazei
Macromolecule	Probable tRNA pseudouridine synthase D (protein)

Explore in 3D

1ZQ7 \| pdb_00001zq7	Download File View File

X-Ray Crystal Structure of Protein Q8PZK8 from Methanosarcina mazei. Northeast Structural Genomics Consortium Target MaR9.

Kuzin, A.P., Abashidze, M., Vorobiev, S.M., Yong, W., Xiao, R., Ma, L.-C., Acton, T., Montelione, G.T., Tong, L., Hunt, J., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-05-31
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Methanosarcina mazei
Macromolecule	Hypothetical protein MM0484 (protein)

Explore in 3D

2C61 \| pdb_00002c61	Download File View File

Crystal structure of the non-catalytic B subunit of A-type ATPase from M. mazei Go1

Schaefer, I., Bailer, S.M., Dueser, M., Boersch, M., Bernal, R.A., Grueber, G., Stock, D.

(2006) J Mol Biology 358: 725

Released	2006-12-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	A-TYPE ATP SYNTHASE NON-CATALYTIC SUBUNIT B (protein)

Explore in 3D

2E3C \| pdb_00002e3c	Download File View File

Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase

Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Mol Biology 378: 634-652

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase (protein)

Explore in 3D

2I1S \| pdb_00002i1s	Download File View File

Crystal Structure of Protein of Unknown Function MM3350 from Methanosarcina mazei Go1

Nocek, B., Borovilos, M., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	Hypothetical protein (protein)

Explore in 3D

2I5E \| pdb_00002i5e	Download File View File

Crystal Structure of a Protein of Unknown Function MM2497 from Methanosarcina mazei Go1, Probable Nucleotidyltransferase

Tan, K., Du, J., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	Hypothetical protein MM_2497 (protein)
Unique Ligands	PEG, TRS

Explore in 3D

2KBN \| pdb_00002kbn	Download File View File

Solution NMR structure of the OB domain (residues 67-166) of MM0293 from Methanosarcina mazei. Northeast Structural Genomics Consortium target MaR214a.

Ramelot, T.A., Ding, K., Magliqui, M., Jiang, M., Ciccosanti, C., Xiao, R., Lui, J., Everett, J.K., Swapna, G., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2009-07-07
Method	SOLUTION NMR
Organisms	Methanosarcina mazei
Macromolecule	Conserved protein (protein)

Explore in 3D

2KEN \| pdb_00002ken	Download File View File

Solution NMR structure of the OB domain (residues 67-166) of MM0293 from Methanosarcina mazei. Northeast Structural Genomics Consortium target MaR214a.

Ramelot, T.A., Ding, K., Magliqui, M., Jiang, M., Ciccosanti, C., Xiao, R., Lui, J., Everett, J.K., Swapna, G., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2009-02-10
Method	SOLUTION NMR
Organisms	Methanosarcina mazei
Macromolecule	Conserved protein (protein)

Explore in 3D

2KZW \| pdb_00002kzw	Download File View File

Solution NMR Structure of Q8PSA4 from Methanosarcina mazei, Northeast Structural Genomics Consortium Target MaR143A

Mills, J.L., Eletsky, A., Lee, H., Lee, D., Ciccosanti, C., Hamilton, K., Acton, T.B., Xiao, R., Everett, J.K., Prestegard, J.H., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2010-08-25
Method	SOLUTION NMR
Organisms	Methanosarcina mazei
Macromolecule	Uncharacterized protein (protein)

Explore in 3D

2NR4 \| pdb_00002nr4	Download File View File

Crystal structure of FMN-bound protein MM1853 from Methanosarcina mazei, Pfam DUF447

Bonanno, J.B., Gilmore, J., Bain, K.T., Lau, C., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-11-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Methanosarcina mazei
Macromolecule	Conserved hypothetical protein (protein)
Unique Ligands	FMN

Explore in 3D

2OV6 \| pdb_00002ov6	Download File View File

The NMR structure of subunit F of the Methanogenic A1Ao ATP synthase and its interaction with the nucleotide-binding subunit B

Gayen, S., Subramanian, V., Biukovic, G.

(2007) Biochemistry 46: 11684-11694

Released	2007-12-25
Method	SOLUTION NMR
Organisms	Methanosarcina mazei Go1
Macromolecule	V-type ATP synthase subunit F (protein)

Explore in 3D

2Q2E \| pdb_00002q2e	Download File View File

Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei

Corbett, K.D., Benedetti, P., Berger, J.M.

(2007) Nat Struct Mol Biol 14: 611-619

Released	2007-07-10
Method	X-RAY DIFFRACTION 4 Å
Organisms	Methanosarcina mazei
Macromolecule	Type 2 DNA topoisomerase 6 subunit B (protein) Type II DNA topoisomerase VI subunit A (protein)

Explore in 3D

2Q7E \| pdb_00002q7e	Download File View File

The structure of pyrrolysyl-tRNA synthetase bound to an ATP analogue

Kavran, J.M., Steitz, T.A.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase (protein)
Unique Ligands	ANP, EDO, MG

Explore in 3D

2Q7G \| pdb_00002q7g	Download File View File

Pyrrolysine tRNA Synthetase bound to a pyrrolysine analogue (cyc) and ATP

Kavran, J.M., Steitz, T.A.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase (protein)
Unique Ligands	ATP, CCL, EDO, MG

Explore in 3D

2Q7H \| pdb_00002q7h	Download File View File

Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate

Kavran, J.M., Steitz, T.A.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase (protein)
Unique Ligands	EDO, POP, YLY

Explore in 3D

2RKW \| pdb_00002rkw	Download File View File

Intermediate position of ATP on its trail to the binding pocket inside the subunit B mutant R416W of the energy converter A1Ao ATP synthase

Kumar, A., Manimekalai, M.S.S., Balakrishna, A.M., Hunke, C., Gruber, G.

(2009) Proteins 75: 807-819

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Methanosarcina mazei
Macromolecule	V-type ATP synthase beta chain (protein)

Explore in 3D

2XR1 \| pdb_00002xr1	Download File View File

DIMERIC ARCHAEAL CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR WITH N-TERMINAL KH DOMAINS (KH-CPSF) FROM METHANOSARCINA MAZEI

Mir-Montazeri, B., Ammelburg, M., Forouzan, D., Lupas, A.N., Hartmann, M.D.

(2011) J Struct Biol 173: 191

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Methanosarcina mazei
Macromolecule	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100 KD SUBUNIT (protein)
Unique Ligands	ZN

Explore in 3D

2XRY \| pdb_00002xry	Download File View File

X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei

Kiontke, S., Geisselbrecht, Y., Pokorny, R., Carell, T., Batschauer, A., Essen, L.O.

(2011) EMBO J 30: 4437

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanosarcina mazei Go1
Macromolecule	DEOXYRIBODIPYRIMIDINE PHOTOLYASE (protein)
Unique Ligands	FAD, GOL, SO4

Explore in 3D

2XRZ \| pdb_00002xrz	Download File View File

X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei in complex with intact CPD-lesion

Kiontke, S., Geisselbrecht, Y., Pokorny, R., Carell, T., Batschauer, A., Essen, L.O.

(2011) EMBO J 30: 4437

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	DEOXYRIBODIPYRIMIDINE PHOTOLYASE (protein) COUNTERSTRAND-OLIGONUCLEOTIDE (nucleic acid) CPD-COMPRISING OLIGONUCLEOTIDE (nucleic acid)
Unique Ligands	ACT, FAD, GOL, SO4

Explore in 3D

2ZCE \| pdb_00002zce	Download File View File

Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with pyrrolysine and an ATP analogue

Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Mol Biology 378: 634-652

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase (protein)
Unique Ligands	ANP, MG, PYL

Explore in 3D

2ZIM \| pdb_00002zim	Download File View File

Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate

Steitz, T.A., Kavran, J.M.

(2007) Proc Natl Acad Sci U S A 104: 11268-11273

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysyl-tRNA synthetase (protein)
Unique Ligands	EDO, POP, YLY

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1L0Q | pdb_00001l0q

1XN9 | pdb_00001xn9

1XUV | pdb_00001xuv

1YEZ | pdb_00001yez

1Z2Z | pdb_00001z2z

1ZQ7 | pdb_00001zq7

2C61 | pdb_00002c61

2E3C | pdb_00002e3c

2I1S | pdb_00002i1s

2I5E | pdb_00002i5e

2KBN | pdb_00002kbn

2KEN | pdb_00002ken

2KZW | pdb_00002kzw

2NR4 | pdb_00002nr4

2OV6 | pdb_00002ov6

2Q2E | pdb_00002q2e

2Q7E | pdb_00002q7e

2Q7G | pdb_00002q7g

2Q7H | pdb_00002q7h

2RKW | pdb_00002rkw

2XR1 | pdb_00002xr1

2XRY | pdb_00002xry

2XRZ | pdb_00002xrz

2ZCE | pdb_00002zce

2ZIM | pdb_00002zim