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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Plasmodium berghei ANKA"

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This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Plasmodium berghei ANKA (10)
	Mus musculus (5)
	Plasmodium berghei (strain Anka) (2)
	Plasmodium falciparum (2)

Taxonomy

	Eukaryota (12)
	Eukaryota (eukaryotes) (2)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (1)
	2015 - 2019 (1)
	2020 - 2024 (7)

Enzyme Classification Name

	Ligases (2)
	Lyases (2)
	Hydrolases (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	Artifacts (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 12 of 12 Structures

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2EPH \| pdb_00002eph	Download File View File

Crystal structure of fructose-bisphosphate aldolase from Plasmodium falciparum in complex with TRAP-tail determined at 2.7 angstrom resolution

Bosch, J., Buscaglia, C.A., Krumm, B., Cardozo, T., Nussenzweig, V., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

(2007) Proc Natl Acad Sci U S A 104: 7015-7020

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Plasmodium berghei (strain Anka) Plasmodium falciparum
Macromolecule	Fructose-bisphosphate aldolase (protein) PbTRAP (protein)

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2PC4 \| pdb_00002pc4	Download File View File

Crystal structure of fructose-bisphosphate aldolase from Plasmodium falciparum in complex with TRAP-tail determined at 2.4 angstrom resolution

Bosch, J., Buscaglia, C.A., Krumm, B., Cardozo, T., Nussenzweig, V., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

(2007) Proc Natl Acad Sci U S A 104: 7015-7020

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Plasmodium berghei (strain Anka) Plasmodium falciparum
Macromolecule	Fructose-bisphosphate aldolase (protein) PbTRAP (protein)

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2WKB \| pdb_00002wkb	Download File View File

Crystal Structure of Macrophage Migration Inhibitory Factor from Plasmodium berghei

Dobson, S.E., Augustijn, K.D., Brannigan, J.A., Dodson, E.J., Waters, A.P., Wilkinson, A.J.

(2009) Protein Sci 18: 2578

Released	2009-10-27
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Plasmodium berghei ANKA
Macromolecule	MACROPHAGE MIGRATION INHIBITORY FACTOR (protein)
Unique Ligands	GOL

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4JWQ \| pdb_00004jwq	Download File View File

Crystal Structure of the Calcium Binding Domain of CDPK3 from Plasmodium Berghei, PB000947.00

Wernimont, A.K., Loppnau, P., Lin, Y.H., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Hui, R., Mottaghi, K., Structural Genomics Consortium (SGC)

To be published

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Plasmodium berghei ANKA
Macromolecule	Calcium-dependent protein kinase (protein)
Unique Ligands	CA, SO4

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6I4M \| pdb_00006i4m	Download File View File

Crystal Structure of Plasmodium berghei actin II in the Mg-ADP state

Kumpula, E.-P., Lopez, A.J., Tajedin, L., Han, H., Kursula, I.

(2019) PLoS Biol 17: e3000315-e3000315

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.873 Å
Organisms	Mus musculus Plasmodium berghei ANKA
Macromolecule	Actin-2 (protein) Gelsolin (protein)
Unique Ligands	ADP, CA, MG, SCN

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6X8P \| pdb_00006x8p	Download File View File

Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein NPND peptide

Thai, E., Julien, J.P.

(2020) Elife 9:

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Mus musculus Plasmodium berghei ANKA
Macromolecule	3D11 Fab heavy chain (protein) 3D11 Fab light chain (protein) NPND peptide (protein)
Unique Ligands	EDO

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6X8Q \| pdb_00006x8q	Download File View File

Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein PAPP peptide

Thai, E., Julien, J.P.

(2020) Elife 9:

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus Plasmodium berghei ANKA
Macromolecule	3D11 Fab heavy chain (protein) 3D11 Fab light chain (protein) PAPP peptide (protein)
Unique Ligands	EDO

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6X8S \| pdb_00006x8s	Download File View File

Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein NAND peptide

Thai, E., Julien, J.P.

(2020) Elife 9:

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mus musculus Plasmodium berghei ANKA
Macromolecule	3D11 Fab heavy chain (protein) 3D11 Fab light chain (protein) NAND peptide (protein)
Unique Ligands	EDO

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6X8U \| pdb_00006x8u	Download File View File

Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein Mixed peptide

Thai, E., Julien, J.P.

(2020) Elife 9:

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mus musculus Plasmodium berghei ANKA
Macromolecule	3D11 Fab heavy chain (protein) 3D11 Fab light chain (protein) Mixed peptide (protein)
Unique Ligands	GOL

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7A0H \| pdb_00007a0h	Download File View File

Structure of homodimeric actin capping protein alpha subunit from Plasmodium berghei

Bendes, A.A., Kursula, P., Kursula, I.

(2022) Cell Mol Life Sci 79: 125-125

Released	2021-08-18
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Plasmodium berghei ANKA
Macromolecule	F-actin-capping protein subunit alpha (protein)
Unique Ligands	BR, EPE, GOL

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8BCQ \| pdb_00008bcq	Download File View File

N-terminal domain of Plasmodium berghei glutamyl-tRNA synthetase (native crystal structure)

Benas, P., Jaramillo Ponce, J.R., Frugier, M., Sauter, C.

(2023) Protein Sci 32: e4564-e4564

Released	2023-01-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Plasmodium berghei ANKA
Macromolecule	Glutamate--tRNA ligase (protein)
Unique Ligands	GOL, SO4

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8BHD \| pdb_00008bhd	Download File View File

N-terminal domain of Plasmodium berghei glutamyl-tRNA synthetase (Tbxo4 derivative crystal structure)

Benas, P., Jaramillo Ponce, J.R., Legrand, P., Frugier, M., Sauter, C.

(2023) Protein Sci 32: e4564-e4564

Released	2023-01-25
Method	X-RAY DIFFRACTION 3.17 Å
Organisms	Plasmodium berghei ANKA
Macromolecule	Glutamate--tRNA ligase (protein)
Unique Ligands	GOL, SO4, TB

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2EPH | pdb_00002eph

Crystal structure of fructose-bisphosphate aldolase from Plasmodium falciparum in complex with TRAP-tail determined at 2.7 angstrom resolution

2PC4 | pdb_00002pc4

Crystal structure of fructose-bisphosphate aldolase from Plasmodium falciparum in complex with TRAP-tail determined at 2.4 angstrom resolution

2WKB | pdb_00002wkb

Crystal Structure of Macrophage Migration Inhibitory Factor from Plasmodium berghei

4JWQ | pdb_00004jwq

Crystal Structure of the Calcium Binding Domain of CDPK3 from Plasmodium Berghei, PB000947.00

6I4M | pdb_00006i4m

Crystal Structure of Plasmodium berghei actin II in the Mg-ADP state

6X8P | pdb_00006x8p

Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein NPND peptide

6X8Q | pdb_00006x8q

Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein PAPP peptide

6X8S | pdb_00006x8s

Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein NAND peptide

6X8U | pdb_00006x8u

Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein Mixed peptide

7A0H | pdb_00007a0h

Structure of homodimeric actin capping protein alpha subunit from Plasmodium berghei

8BCQ | pdb_00008bcq

N-terminal domain of Plasmodium berghei glutamyl-tRNA synthetase (native crystal structure)

8BHD | pdb_00008bhd

N-terminal domain of Plasmodium berghei glutamyl-tRNA synthetase (Tbxo4 derivative crystal structure)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2EPH | pdb_00002eph

2PC4 | pdb_00002pc4

2WKB | pdb_00002wkb

4JWQ | pdb_00004jwq

6I4M | pdb_00006i4m

6X8P | pdb_00006x8p

6X8Q | pdb_00006x8q

6X8S | pdb_00006x8s

6X8U | pdb_00006x8u

7A0H | pdb_00007a0h

8BCQ | pdb_00008bcq

8BHD | pdb_00008bhd