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239,865
Structures from the PDB archive

1,068,577
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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Pseudomonas aeruginosa"

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Homo sapiens (21)
	Klebsiella pneumoniae (2)

Taxonomy

	Eukaryota (21)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (6)
	2.0 - 2.5 (10)
	2.5 - 3.0 (1)

Release Date

	2015 - 2019 (9)
	2020 - 2024 (11)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (18)
	Transferases (2)

Symmetry Type

	Asymmetric (15)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Alpha and beta proteins (a/b) (5)
	Artifacts (2)
	All alpha proteins (2)
	All beta proteins (2)

AllSelected

1 to 23 of 23 Structures

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5A5Z \| pdb_00005a5z	Download File View File

Approved Drugs Containing Thiols as Inhibitors of Metallo-beta- lactamases: Strategy To Combat Multidrug-Resistant Bacteria

Klingler, F.M., Wichelhaus, T.A., Frank, D., Cuesta-Bernal, J., El-Delik, J., Mueller, H.F., Sjuts, H., Goettig, S., Koenigs, A., Pogoryelov, D., Proschak, E.

(2015) J Med Chem 58: 3626-3630

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Klebsiella pneumoniae
Macromolecule	BETA-LACTAMASE NDM-1 (protein)
Unique Ligands	WJZ, ZN

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5AEN \| pdb_00005aen	Download File View File

Structure of human Leukotriene A4 hydrolase in complex with inhibitor dimethyl(2- (4-phenoxyphenoxy)ethyl)amine

Moser, D., Wittmann, S.K., Kramer, J., Blocher, R., Achenbach, J., Pogoryelov, D., Proschak, E.

(2015) J Chem Inf Model 55: 284

Released	2015-02-11
Method	X-RAY DIFFRACTION 1.864 Å
Organisms	Homo sapiens
Macromolecule	LEUKOTRIENE A-4 HYDROLASE (protein)
Unique Ligands	DP8, IMD, YB, ZN

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5FWQ \| pdb_00005fwq	Download File View File

Apo structure of human Leukotriene A4 hydrolase

Wittmann, S.K., Kalinowsky, L., Kramer, J., Bloecher, R., Steinhilber, D., Pogoryelov, D., Proschak, E., Heering, J.

(2016) Bioorg Med Chem 24: 5243-5248

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.047 Å
Organisms	Homo sapiens
Macromolecule	HUMAN LEUKOTRIENE A4 HYDROLASE (protein)
Unique Ligands	ACT, IMD, YB, ZN

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5MWA \| pdb_00005mwa	Download File View File

human sEH Phosphatase in complex with 3-4-3,4-dichlorophenyl-5-phenyl-1,3-oxazol-2-yl-benzoic-acid

Kramer, J.S., Pogoryelov, D., Sorrell, F.J., Fox, N., Chaikuad, A., Knapp, S., Proschak, E.

(2019) J Med Chem

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	8S9, MG

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5O7N \| pdb_00005o7n	Download File View File

Beta-lactamase VIM-2 in complex with (2R)-1-(2-Benzyl-3-mercaptopropanoyl)piperidine-2-carboxylic acid

Buettner, D., Kramer, J.S., Pogoryelov, D., Proschak, E.

(2018) ACS Infect Dis 4: 360-372

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase VIM-2 (protein)
Unique Ligands	9NK, EDO, FMT, ZN

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6FR2 \| pdb_00006fr2	Download File View File

Soluble epoxide hydrolase in complex with LK864

Kramer, J.S., Pogoryelov, D., Krasavin, M., Proschak, E.

(2018) Bioorg Chem 80: 655-667

Released	2018-09-12
Method	X-RAY DIFFRACTION 2.262 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	E3N, MG

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6HGV \| pdb_00006hgv	Download File View File

Soluble epoxide hydrolase in complex with talinolol

Kramer, J.S., Pogoryelov, D., Hiesinger, K., Proschak, E.

(2019) ACS Med Chem Lett 10: 899-903

Released	2019-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	G3Q, MG

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6HGW \| pdb_00006hgw	Download File View File

Soluble epoxide hydrolase in complex with 2-(4-fluorophenyl)-N-(4-phenoxybenzyl)ethanamine

Kramer, J.S., Pogoryelov, D., Hiesinger, K., Proschak, E.

To be published

Released	2019-08-07
Method	X-RAY DIFFRACTION 2.407 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	G3W

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6HGX \| pdb_00006hgx	Download File View File

Soluble epoxide hydrolase in complex with 1-(4-((4-(tert-butyl)morpholin-2-yl)methoxy)phenyl)-3-cyclohexylurea

Kramer, J.S., Pogoryelov, D., Hiesinger, K., Proschak, E.

(2019) ACS Med Chem Lett 10: 899-903

Released	2019-07-03
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	G3T, MG

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6TBE \| pdb_00006tbe	Download File View File

LC3A in complex with (3R,4S,5R,6R)-5-hydroxy-6-((4-hydroxy-3-(4-hydroxy-3-isopentylbenzamido)-8-methyl-2-oxo-2H-chromen-7-yl)oxy)-3-methoxy-2,2-dimethyltetrahydro-2H-pyran-4-yl carbamate

Kramer, J.S., Pogoryelov, D., Hartmann, M., Chaikuad, A., Proschak, E.

(2021) J Med Chem 64: 3720-3746

Released	2020-11-18
Method	X-RAY DIFFRACTION 1.67008040045 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3A (protein)
Unique Ligands	EDO, NOV

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6YL4 \| pdb_00006yl4	Download File View File

Soluble epoxide hydrolase in complex with 3-((R)-3-(1-hydroxyureido)but-1-yn-1-yl)-N-((S)-3-phenyl-3-(4-trifluoromethoxy)phenyl)propyl)benzamide

Kramer, J.S., Pogoryelov, D., Hiesinger, K., Proschak, E.

(2020) J Med Chem 63: 11498-11521

Released	2020-10-21
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	OWW

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7A7G \| pdb_00007a7g	Download File View File

Soluble epoxide hydrolase in complex with TK90

Ni, X., Kramer, J.S., Kirchner, T., Proschak, E., Chaikuad, A., Knapp, S., Structural Genomics Consortium (SGC)

(2021) J Med Chem 64: 2815-2828

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	TK9

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7A7H \| pdb_00007a7h	Download File View File

Crystal structure of PPARgamma in complex with compound TK90

Ni, X., Kirchner, T., Proschak, E., Chaikuad, A., Knapp, S., Structural Genomics Consortium (SGC)

(2021) J Med Chem 64: 2815-2828

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	EDO, TK9

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7P4E \| pdb_00007p4e	Download File View File

Crystal structure of PPARgamma in complex with compound FL217

Ni, X., Lillich, F., Proschak, E., Chaikuad, A., Knapp, S., Structural Genomics Consortium (SGC)

(2021) J Med Chem 64: 17259-17276

Released	2022-07-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	5IV, EDO, SO4

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7P4K \| pdb_00007p4k	Download File View File

Soluble epoxide hydrolase in complex with FL217

Ni, X., Kramer, J.S., Lillich, F., Proschak, E., Chaikuad, A., Knapp, S., Structural Genomics Consortium (SGC)

(2021) J Med Chem 64: 17259-17276

Released	2022-07-06
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	5IV

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8BFM \| pdb_00008bfm	Download File View File

Crystal structure of human calmodulin-dependent protein kinase 1D (CAMK1D) in complex with FZ331

Kraemer, A., Zhu, W.F., Hernandez-Olmos, V., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)

To be published

Released	2022-11-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Calcium/calmodulin-dependent protein kinase type 1D (protein)
Unique Ligands	QI6, SO4

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8BFS \| pdb_00008bfs	Download File View File

Crystal structure of human calmodulin-dependent protein kinase 1D (CAMK1D) in complex with FZ326

Kraemer, A., Zhu, W.F., Hernandez-Olmos, V., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)

To be published

Released	2022-11-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Calcium/calmodulin-dependent protein kinase type 1D (protein)
Unique Ligands	EDO, QNR, SO4

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8QMZ \| pdb_00008qmz	Download File View File

Soluble epoxide hydrolase in complex with RK4

Kumar, A., Zhu, F., Ehrler, J.M.H., Li, F., Empel, C., Xu, Y., Atodiresei, I., Koenigs, R.M., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)

(2024) Science 383: 498-503

Released	2024-02-14
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	EDO, W6O

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8QN0 \| pdb_00008qn0	Download File View File

Soluble epoxide hydrolase in complex with RK3

Kumar, A., Zhu, F., Ehrler, J.M.H., Li, F., Empel, C., Xu, Y., Atodiresei, I., Koenigs, R.M., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)

(2024) Science 383: 498-503

Released	2024-02-14
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	EDO, WJ5

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8QZD \| pdb_00008qzd	Download File View File

Soluble epoxide hydrolase in complex with Epoxykinin

Kumar, A., Ehrler, J.M.H., Ziegler, S., Doetsch, L., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)

(2024) J Med Chem 67: 4691-4706

Released	2024-02-28
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	BR, EDO, XDZ

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8S75 \| pdb_00008s75	Download File View File

Soluble epoxide hydrolase in complex with PROTAC FL412

Kumar, A., Schoenfeld, J., Hiesinger, K., Lillich, F., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)

To be published

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	A1H5L, EDO, PG4

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8S76 \| pdb_00008s76	Download File View File

Soluble epoxide hydrolase in complex with PROTAC JSF67

Kumar, A., Schoenfeld, J., Hiesinger, K., Lillich, F., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)

To be published

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	A1H5M, EDO, PEG

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8S77 \| pdb_00008s77	Download File View File

Soluble epoxide hydrolase in complex with PROTAC JSF234

Kumar, A., Schoenfeld, J., Hiesinger, K., Lillich, F., Proschak, E., Knapp, S., Structural Genomics Consortium (SGC)

To be published

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	A1H5J, EDO, PEG

1 to 23 of 23 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5A5Z | pdb_00005a5z

5AEN | pdb_00005aen

5FWQ | pdb_00005fwq

5MWA | pdb_00005mwa

5O7N | pdb_00005o7n

6FR2 | pdb_00006fr2

6HGV | pdb_00006hgv

6HGW | pdb_00006hgw

6HGX | pdb_00006hgx

6TBE | pdb_00006tbe

6YL4 | pdb_00006yl4

7A7G | pdb_00007a7g

7A7H | pdb_00007a7h

7P4E | pdb_00007p4e

7P4K | pdb_00007p4k

8BFM | pdb_00008bfm

8BFS | pdb_00008bfs

8QMZ | pdb_00008qmz

8QN0 | pdb_00008qn0

8QZD | pdb_00008qzd

8S75 | pdb_00008s75

8S76 | pdb_00008s76

8S77 | pdb_00008s77