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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Severe fever with thrombocytopenia syndrome virus"

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Severe fever with thrombocytopenia syndrome virus (15)
	Mus musculus (4)
	Homo sapiens (3)

Taxonomy

	Riboviria (15)
	Eukaryota (7)

Experimental Method

	X-RAY DIFFRACTION (8)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	2.0 - 2.5 (6)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (4)

Release Date

	2015 - 2019 (3)
	2020 - 2024 (11)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (1)
	Transferases (1)

Membrane Protein Annotation

MemProtMD (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (4)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 15 of 15 Structures

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5G47 \| pdb_00005g47	Download File View File

Structure of Gc glycoprotein from severe fever with thrombocytopenia syndrome virus in the trimeric postfusion conformation

Halldorsson, S., Behrens, A.J., Harlos, K., Huiskonen, J.T., Elliott, R.M., Crispin, M., Brennan, B., Bowden, T.A.

(2016) Proc Natl Acad Sci U S A 113: 7154

Released	2016-07-06
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	SFTSV GC (protein)
Unique Ligands	CL, NAG

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5Y10 \| pdb_00005y10	Download File View File

SFTSV Gn head domain

Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.

(2017) Proc Natl Acad Sci U S A 114: E7564-E7573

Released	2017-09-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	Membrane glycoprotein polyprotein (protein)
Unique branched monosaccharides	MAN, NAG

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5Y11 \| pdb_00005y11	Download File View File

SFTSV GN with neutralizing antibody MAb4-5

Wu, Y., Gao, F., Qi, J.X., Chai, Y., Gao, G.F.

(2017) Proc Natl Acad Sci U S A 114: E7564-E7573

Released	2017-09-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Severe fever with thrombocytopenia syndrome virus
Macromolecule	MAb 4-5 heavy chain (protein) MAb 4-5 light chain (protein) Membrane glycoprotein polyprotein (protein)
Unique branched monosaccharides	MAN, NAG

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6NTV \| pdb_00006ntv	Download File View File

SFTSV L endonuclease domain

Wang, W., Amarasinghe, G.K.

(2020) Cell Rep 30: 153-163.e5

Released	2020-01-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	RNA polymerase (protein)

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7X6U \| pdb_00007x6u	Download File View File

SFTSV 3 fold hexmer

Sun, Z., Lou, Z.

(2023) Protein Cell 14: 914-918

Released	2023-08-16
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein)
Unique branched monosaccharides	MAN, NAG

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7X6W \| pdb_00007x6w	Download File View File

SFTSV 2 fold hexamer

Sun, Z., Lou, Z.

(2023) Protein Cell 14: 914-918

Released	2023-07-19
Method	ELECTRON MICROSCOPY 5.18 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein)
Unique branched monosaccharides	MAN, NAG

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7X72 \| pdb_00007x72	Download File View File

SFTSV 5 fold pentamer

Sun, Z., Lou, Z.

(2023) Protein Cell 14: 914-918

Released	2023-08-16
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein)
Unique branched monosaccharides	MAN, NAG

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8I4T \| pdb_00008i4t	Download File View File

Structure of the asymmetric unit of SFTSV virion

Du, S., Peng, R., Qi, J., Li, C.

(2023) Nat Commun 14: 6333-6333

Released	2023-09-13
Method	ELECTRON MICROSCOPY 5.2 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ILQ \| pdb_00008ilq	Download File View File

Structure of SFTSV Gn-Gc heterodimer

Du, S., Peng, R., Qi, J., Li, C.

(2023) Nat Commun 14: 6333-6333

Released	2023-09-13
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8WQW \| pdb_00008wqw	Download File View File

Cryo-EM structure of bsAb3 Fab-Gn-Gc complex

Wu, Y., Sun, J.Q.

(2024) Proc Natl Acad Sci U S A 121: e2400163121-e2400163121

Released	2024-06-12
Method	ELECTRON MICROSCOPY 3.27 Å
Organisms	Homo sapiens Severe fever with thrombocytopenia syndrome virus
Macromolecule	Glycoprotein C (protein) Glycoprotein N (protein) bsAb3 Fab-heavy chain (protein) bsAb3 Fab-light chain (protein)
Unique branched monosaccharides	MAN, NAG

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8XK5 \| pdb_00008xk5	Download File View File

SNB1G11 Fab bound to SFTSV glycoprotein Gn

Deng, Z.

(2024) Nat Commun 15: 7009-7009

Released	2024-07-10
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Mus musculus Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein) mAb SNB1G11 Fab heavy chain (protein) mAb SNB1G11 Fab light chain (protein)

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8XK6 \| pdb_00008xk6	Download File View File

S2A5 Fab bound to SFTSV glycoprotein Gn

Deng, Z.

(2024) Nat Commun 15: 7009-7009

Released	2024-07-10
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mus musculus Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein) mAb S2A5 Fab heavy chain (protein) mAb S2A5 Fab light chain (protein)

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8XK8 \| pdb_00008xk8	Download File View File

N1D10 Fab bound to SFTSV glycoprotein-Gn

Zhao, H., Deng, Z.

(2024) Nat Commun 15: 7009-7009

Released	2024-07-10
Method	X-RAY DIFFRACTION 3.53 Å
Organisms	Mus musculus Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein) mAb N1D10 Fab heavy chain (protein) mAb N1D10 Fab light chain (protein)

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8YXI \| pdb_00008yxi	Download File View File

Crystal structure of SFTSV Gn in complex with a neutralizing antibody 40C10

Yang, P., Guo, Y., Zhang, N.

(2024) PLoS Pathog 20: e1012550-e1012550

Released	2024-09-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein) heavy chain (protein) light chain (protein)
Unique branched monosaccharides	MAN, NAG

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8ZHQ \| pdb_00008zhq	Download File View File

SFTSV Gn in complex with JK-8/12 Fab

Shang, H., Guo, Y., Zhang, N., Liu, W., Li, H.

(2024) EBioMedicine 111: 105481-105481

Released	2025-01-08
Method	ELECTRON MICROSCOPY 2.37 Å
Organisms	Homo sapiens Severe fever with thrombocytopenia syndrome virus
Macromolecule	Envelopment polyprotein (protein) JK-12 Fab heavy chain (protein) JK-12 Fab light chain (protein) JK-8 Fab heavy chain (protein) JK-8 Fab light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	MAN, NAG

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5G47 | pdb_00005g47

Structure of Gc glycoprotein from severe fever with thrombocytopenia syndrome virus in the trimeric postfusion conformation

5Y10 | pdb_00005y10

SFTSV Gn head domain

5Y11 | pdb_00005y11

SFTSV GN with neutralizing antibody MAb4-5

6NTV | pdb_00006ntv

SFTSV L endonuclease domain

7X6U | pdb_00007x6u

SFTSV 3 fold hexmer

7X6W | pdb_00007x6w

SFTSV 2 fold hexamer

7X72 | pdb_00007x72

SFTSV 5 fold pentamer

8I4T | pdb_00008i4t

Structure of the asymmetric unit of SFTSV virion

8ILQ | pdb_00008ilq

Structure of SFTSV Gn-Gc heterodimer

8WQW | pdb_00008wqw

Cryo-EM structure of bsAb3 Fab-Gn-Gc complex

8XK5 | pdb_00008xk5

SNB1G11 Fab bound to SFTSV glycoprotein Gn

8XK6 | pdb_00008xk6

S2A5 Fab bound to SFTSV glycoprotein Gn

8XK8 | pdb_00008xk8

N1D10 Fab bound to SFTSV glycoprotein-Gn

8YXI | pdb_00008yxi

Crystal structure of SFTSV Gn in complex with a neutralizing antibody 40C10

8ZHQ | pdb_00008zhq

SFTSV Gn in complex with JK-8/12 Fab

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5G47 | pdb_00005g47

5Y10 | pdb_00005y10

5Y11 | pdb_00005y11

6NTV | pdb_00006ntv

7X6U | pdb_00007x6u

7X6W | pdb_00007x6w

7X72 | pdb_00007x72

8I4T | pdb_00008i4t

8ILQ | pdb_00008ilq

8WQW | pdb_00008wqw

8XK5 | pdb_00008xk5

8XK6 | pdb_00008xk6

8XK8 | pdb_00008xk8

8YXI | pdb_00008yxi

8ZHQ | pdb_00008zhq