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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.2.1.177

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Escherichia coli (5)
	Bacteroides ovatus (2)
	Aspergillus niger (1)
	Listeria monocytogenes (1)

Taxonomy

	Bacteria (8)
	Eukaryota (1)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (2)
	2015 - 2019 (4)

Enzyme Classification Name

Hydrolases (9)

Symmetry Type

	Dihedral (6)
	Asymmetric (3)
	Cyclic (1)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a/b) (5)
	Artifacts (4)

AllSelected

1 to 9 of 9 Structures

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1WE5 \| pdb_00001we5	Download File View File

Crystal Structure of Alpha-Xylosidase from Escherichia coli

Ose, T., Kitamura, M., Okuyama, M., Mori, H., Kimura, A., Watanabe, N., Yao, M., Tanaka, I.

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Putative family 31 glucosidase yicI (protein)
Unique Ligands	MES

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1XSI \| pdb_00001xsi	Download File View File

Structure of a Family 31 alpha glycosidase

Lovering, A.L., Lee, S.S., Kim, Y.W., Withers, S.G., Strynadka, N.C.

(2005) J Biological Chem 280: 2105-2115

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Putative family 31 glucosidase yicI (protein)
Unique Ligands	ACY, MPO, SO4

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1XSJ \| pdb_00001xsj	Download File View File

Structure of a Family 31 alpha glycosidase

Lovering, A.L., Lee, S.S., Kim, Y.W., Withers, S.G., Strynadka, N.C.

(2005) J Biological Chem 280: 2105-2115

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Putative family 31 glucosidase yicI (protein)
Unique Ligands	TRS

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1XSK \| pdb_00001xsk	Download File View File

Structure of a Family 31 alpha glycosidase glycosyl-enzyme intermediate

Lovering, A.L., Lee, S.S., Kim, Y.W., Withers, S.G., Strynadka, N.C.

(2005) J Biological Chem 280: 2105-2115

Released	2004-11-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Putative family 31 glucosidase yicI (protein)
Unique Ligands	MPO, SO4, XYF

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2F2H \| pdb_00002f2h	Download File View File

Structure of the YicI thiosugar Michaelis complex

Kim, Y.-W., Lovering, A.L., Strynadka, N.C.J., Withers, S.G.

(2006) J Am Chem Soc 128: 2202-2203

Released	2006-02-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Putative family 31 glucosidase yicI (protein)
Unique Ligands	GOL, MPO, SO4, XTG

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5HXM \| pdb_00005hxm	Download File View File

Cycloalternan-forming enzyme from Listeria monocytogenes in complex with panose

Halavaty, A.S., Light, S.H., Minasov, G., Winsor, J., Grimshaw, S., Shuvalova, L., Peterson, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2017) Structure 25: 295-304

Released	2017-01-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Listeria monocytogenes
Macromolecule	Alpha-xylosidase (protein)
Unique Ligands	CA, CL, MG
Unique branched monosaccharides	GLC

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5JOU \| pdb_00005jou	Download File View File

Bacteroides ovatus Xyloglucan PUL GH31

Thompson, A.J., Hemsworth, G.R., Stepper, J., Sobala, L.F., Coyle, T., Larsbrink, J., Spadiut, O., Stubbs, K.A., Brumer, H., Davies, G.J.

(2016) Open Biol 6:

Released	2016-08-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacteroides ovatus
Macromolecule	Alpha-xylosidase BoGH31A (protein)
Unique Ligands	EDO, NI

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5JOV \| pdb_00005jov	Download File View File

Bacteroides ovatus Xyloglucan PUL GH31 with bound 5FIdoF

Thompson, A.J., Hemsworth, G.R., Stepper, J., Sobala, L.F., Coyle, T., Larsbrink, J., Spadiut, O., Stubbs, K.A., Brumer, H., Davies, G.J.

(2016) Open Biol 6:

Released	2016-08-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacteroides ovatus
Macromolecule	Alpha-xylosidase BoGH31A (protein)
Unique Ligands	B9D, EDO, EPE, NI

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6DRU \| pdb_00006dru	Download File View File

Xylosidase from Aspergillus niger

Cao, H., Xu, W., Betancourt, M., Walton, J.D., Brumm, P., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)

(2020) ACS Sustain Chem Eng 8: 2540-2547

Released	2018-08-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Aspergillus niger
Macromolecule	Glycosyl hydrolases family 31 family protein (protein)
Unique Ligands	GOL, NAG, XYS
Unique branched monosaccharides	BGC, BMA, GAL, MAN, NAG, XYS

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1WE5 | pdb_00001we5

Crystal Structure of Alpha-Xylosidase from Escherichia coli

1XSI | pdb_00001xsi

Structure of a Family 31 alpha glycosidase

1XSJ | pdb_00001xsj

Structure of a Family 31 alpha glycosidase

1XSK | pdb_00001xsk

Structure of a Family 31 alpha glycosidase glycosyl-enzyme intermediate

2F2H | pdb_00002f2h

Structure of the YicI thiosugar Michaelis complex

5HXM | pdb_00005hxm

Cycloalternan-forming enzyme from Listeria monocytogenes in complex with panose

5JOU | pdb_00005jou

Bacteroides ovatus Xyloglucan PUL GH31

5JOV | pdb_00005jov

Bacteroides ovatus Xyloglucan PUL GH31 with bound 5FIdoF

6DRU | pdb_00006dru

Xylosidase from Aspergillus niger

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1WE5 | pdb_00001we5

1XSI | pdb_00001xsi

1XSJ | pdb_00001xsj

1XSK | pdb_00001xsk

2F2H | pdb_00002f2h

5HXM | pdb_00005hxm

5JOU | pdb_00005jou

5JOV | pdb_00005jov

6DRU | pdb_00006dru