RCSB PDB: Search

5AGU	Download File View File

The sliding clamp of Mycobacterium tuberculosis in complex with a natural product.

Lukat, P., Kling, A., Heinz, D.W., Mueller, R.

(2015) Science 348: 1106

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.173 Å
Organisms	Mycobacterium tuberculosis H37Rv Streptomyces muensis
Macromolecule	DNA POLYMERASE III SUBUNIT BETA (protein) GRISELIMYCIN (protein)
Unique Ligands	BU3, TRS

Explore in 3D

5AGV	Download File View File

The sliding clamp of Mycobacterium tuberculosis in complex with a natural product.

Lukat, P., Kling, A., Heinz, D.W., Mueller, R.

(2015) Science 348: 1106

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Mycobacterium tuberculosis H37Rv Streptomyces muensis
Macromolecule	CYCLOHEXYL GRISELIMYCIN (protein) DNA POLYMERASE III SUBUNIT BETA (protein)
Unique Ligands	BU3, CA, NA

Explore in 3D

5AH2	Download File View File

The sliding clamp of Mycobacterium smegmatis in complex with a natural product.

Lukat, P., Kling, A., Heinz, D.W., Mueller, R.

(2015) Science 348: 1106

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.129 Å
Organisms	Mycolicibacterium smegmatis Streptomyces muensis
Macromolecule	DNA POLYMERASE III SUBUNIT BETA (protein) GRISELIMYCIN (protein)
Unique Ligands	NA

Explore in 3D

5AH4	Download File View File

The sliding clamp of Mycobacterium smegmatis in complex with a natural product.

Lukat, P., Kling, A., Heinz, D.W., Mueller, R.

(2015) Science 348: 1106

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.313 Å
Organisms	Mycolicibacterium smegmatis Streptomyces muensis
Macromolecule	CYCLOHEXYL GRISELIMYCIN (protein) DNA POLYMERASE III SUBUNIT BETA (protein)
Unique Ligands	NA

Explore in 3D

6DJ8	Download File View File

Structure of DNA polymerase III subunit beta from Borrelia burgdorferi in complex with a natural product

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2019-05-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Borreliella burgdorferi B31 Streptomyces
Macromolecule	Beta sliding clamp (protein) Natural product peptide (protein)

Explore in 3D

6DJK	Download File View File

Structure of DNA polymerase III subunit beta from Rickettsia typhi in complex with a natural product

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2019-05-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rickettsia typhi str. Wilmington synthetic construct
Macromolecule	ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY (protein) Beta sliding clamp (protein)
Unique Ligands	EDO, PEG

Explore in 3D

6DLY	Download File View File

Crystal structure of DNA polymerase III subunit beta from Mycobacterium marinum in complex with a natural product

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2019-06-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium marinum M Streptomyces muensis
Macromolecule	Beta sliding clamp (protein) Natural product peptide (protein)
Unique Ligands	EDO

Explore in 3D

6DM6	Download File View File

Structure of DNA polymerase III subunit beta from Rickettsia conorii in complex with a natural product

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2019-06-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Rickettsia conorii str. Malish 7 Streptomyces muensis
Macromolecule	Beta sliding clamp (protein) Natural product peptide (protein)

Explore in 3D

6P81	Download File View File

Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2019-07-10
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Klebsiella pneumoniae IS22 Saccharomyces cerevisiae S288C Streptomyces muensis
Macromolecule	Griselimycin (protein) Ubiquitin-like protein SMT3,Beta sliding clamp (protein)
Unique Ligands	ACT, CA, CL, PG5

Explore in 3D

6PBS	Download File View File

Structure of ClpC1-NTD in complex with Ecumicin

Abad-Zapatero, C., Wolf, N.M.

(2020) Acta Crystallogr D Struct Biol 76: 458-471

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis Nonomuraea sp. MJM5123
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpC1 (protein) ecumicin (protein)
Unique Ligands	ACT

Explore in 3D

6PTH	Download File View File

Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Pseudomonas aeruginosa bound to griselimycin

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2019-08-07
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Pseudomonas aeruginosa PAO1 Streptomyces griseus
Macromolecule	Beta sliding clamp (protein) Griselimycin (protein)
Unique Ligands	SO4

Explore in 3D

6PTR	Download File View File

Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Bartonella birtlesii bound to griselimycin

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2019-08-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bartonella birtlesii LL-WM9 Streptomyces griseus
Macromolecule	ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY (protein) Beta sliding clamp (protein)
Unique Ligands	EDO, IOD

Explore in 3D

6PTV	Download File View File

Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Rickettsia rickettsii bound to griselimycin

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2019-08-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rickettsia rickettsii str. 'Sheila Smith Streptomyces griseus
Macromolecule	ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY (protein) Beta sliding clamp (protein)
Unique Ligands	MPD

Explore in 3D

8CIX	Download File View File

DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Griselimycin.

Fu, C., Liu, Y., Walt, C., Bader, C., Rasheed, S., Lukat, P., Neuber, M., Blankenfeldt, W., Kalinina, O., Mueller, R.

(2024) Nat Commun 15: 791-791

Released	2023-11-29
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Escherichia coli Streptomyces griseus
Macromolecule	Beta sliding clamp (protein) Griselimycin (protein)
Unique Ligands	ACT, CA, GOL, MG, NA

Explore in 3D

8CIY	Download File View File

DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Cyclohexyl-Griselimycin.

Fu, C., Liu, Y., Walt, C., Bader, C., Rasheed, S., Lukat, P., Neuber, M., Blankenfeldt, W., Kalinina, O., Mueller, R.

(2024) Nat Commun 15: 791-791

Released	2023-11-29
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	Beta sliding clamp (protein) Cyclohexyl-Griselimycin (protein)
Unique Ligands	ACT, CA, GOL, MG, NA

Explore in 3D

8CIZ	Download File View File

DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Mycoplanecin A.

Fu, C., Liu, Y., Walt, C., Bader, C., Rasheed, S., Lukat, P., Neuber, M., Blankenfeldt, W., Kalinina, O., Mueller, R.

(2024) Nat Commun 15: 791-791

Released	2023-11-29
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Actinoplanes awajinensis subsp. mycoplanecinus Escherichia coli
Macromolecule	Beta sliding clamp (protein) Mycoplanecin A (protein)

Explore in 3D

8DNY	Download File View File

Cryo-EM structure of the human Sec61 complex inhibited by decatransin

Park, E., Itskanov, S.

(2023) Nat Chem Biol 19: 1063-1071

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Decatransin peptide inhibitor (protein) Protein transport protein Sec61 subunit alpha isoform 1 (protein) Protein transport protein Sec61 subunit beta (protein) Protein transport protein Sec61 subunit gamma (protein)

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type