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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 112 Structures.

Refinements

Structure Determination Methodology

experimental (112)

Scientific Name of Source Organism

	synthetic construct (52)
	Homo sapiens (44)
	Gallus gallus (7)
	Mus musculus (4)
	Pseudomonas aeruginosa (4)
	Staphylococcus aureus (4)
	Bos taurus (3)
	Lama glama (3)
	Oldenlandia affinis (3)
	Viola odorata (3)

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Taxonomy

	Eukaryota (68)
	other sequences (52)
	Bacteria (12)
	Eukaryota (eukaryotes) (3)
	Riboviria (2)
	unclassified sequences (2)
	Monodnaviria (1)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (75)
	SOLUTION NMR (23)
	ELECTRON MICROSCOPY (13)
	POWDER DIFFRACTION (1)

Polymer Entity Type

Protein (112)

Refinement Resolution (Å)

	0.5 - 1.0 (4)
	1.0 - 1.5 (29)
	1.5 - 2.0 (20)
	2.0 - 2.5 (16)
	2.5 - 3.0 (12)
	3.0 - 3.5 (7)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (4)
	2005 - 2009 (15)
	2010 - 2014 (20)
	2015 - 2019 (19)
	2020 - 2024 (50)

Enzyme Classification Name

	Transferases (13)
	Hydrolases (8)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (12)
	mpstruc (12)
	OPM (13)
	MemProtMD (3)

Symmetry Type

	Asymmetric (80)
	Cyclic (21)
	Dihedral (4)

SCOP Classification

	Peptides (5)
	Coiled coil proteins (3)
	Alpha and beta proteins (a+b) (1)
	Designed proteins (2)

AllSelected

1 to 25 of 112 Structures

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1CZQ	Download File View File

CRYSTAL STRUCTURE OF THE D10-P1/IQN17 COMPLEX: A D-PEPTIDE INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 COILED-COIL POCKET.

Eckert, D.M., Malashkevich, V.N., Hong, L.H., Carr, P.A., Kim, P.S.

(1999) Cell 99: 103-115

Released	1999-10-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus Saccharomyces cerevisiae
Macromolecule	D-PEPTIDE INHIBITOR (protein) FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GCN4-PIQI (protein)
Unique Ligands	CL

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1DFY	Download File View File

NMR STRUCTURE OF CONTRYPHAN-SM CYCLIC PEPTIDE (MAJOR FORM-CIS)

Pallaghy, P.K., He, W., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(2000) Biochemistry 39: 12845-12852

Released	2002-05-01
Method	SOLUTION NMR
Organisms	Conus stercusmuscarum
Macromolecule	CONTRYPHAN-SM (protein)

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1DFZ	Download File View File

NMR STRUCTURE OF CONTRYPHAN-SM CYCLIC PEPTIDE (MINOR FORM-TRANS)

Pallaghy, P.K., He, W., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(2000) Biochemistry 39: 12845-12852

Released	2002-05-01
Method	SOLUTION NMR
Organisms	Conus stercusmuscarum
Macromolecule	CONTRYPHAN-SM (protein)

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1DG0	Download File View File

NMR STRUCTURE OF DES[GLY1]-CONTRYPHAN-R CYCLIC PEPTIDE (MAJOR FORM)

Pallaghy, P.K., He, W., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(2000) Biochemistry 39: 12845-12852

Released	2003-09-09
Method	SOLUTION NMR
Organisms	Conus radiatus
Macromolecule	DES[GLY1]-CONTRYPHAN-R (protein)

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1NXN	Download File View File

SOLUTION STRUCTURE OF CONTRYPHAN-VN

Eliseo, T., Cicero, D.O., Polticelli, F., Schinina, M.E., Massilia, G.R., Paci, M., Ascenzi, P.

(2004) Biopolymers 74: 189-198

Released	2003-03-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	CONTRYPHAN-VN, MAJOR FORM (CIS CONFORMER) (protein)

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1QFB	Download File View File

THE CYCLIC PEPTIDE CONTRYPHAN-R FROM CONUS RADIATUS

Pallaghy, P.K., Melnikova, A.P., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(1999) Biochemistry 38: 11553-11559

Released	1999-09-29
Method	SOLUTION NMR
Organisms	Conus radiatus
Macromolecule	PROTEIN (CONTRYPHAN-R) (protein)

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1SOC	Download File View File

NMR STUDY OF THE BACKBONE CONFORMATIONAL EQUILIBRIA OF SANDOSTATIN, MINIMIZED AVERAGE BETA-SHEET STRUCTURE

Melacini, G., Zhu, Q., Goodman, M.

(1997) Biochemistry 36: 1233-1241

Released	1997-04-21
Method	SOLUTION NMR
Macromolecule	SANDOSTATIN (protein)

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1XXZ	Download File View File

Solution structure of sst1-selective somatostatin (SRIF) analog

Grace, C.R.R., Durrer, L., Koerber, S.C., Erchegyi, J., Reubi, J.C., Rivier, J.E., Riek, R.

(2005) J Med Chem 48: 523-533

Released	2005-02-15
Method	SOLUTION NMR
Macromolecule	SST1-selective somatosatin (analog 5) (protein)

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1XY4	Download File View File

NMR strcutre of sst1-selective somatostatin (SRIF) analog 1

Grace, C.R.R., Durrer, L., Koerber, S.C., Erchegyi, J., Reubi, J.C., Rivier, J.E., Riek, R.

(2005) J Med Chem 48: 523-533

Released	2005-02-15
Method	SOLUTION NMR
Macromolecule	SST1-selective somatosatin analog (protein)

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1XY5	Download File View File

NMR strcutre of sst1-selective somatostatin (SRIF) analog 1

Grace, C.R.R., Durrer, L., Koerber, S.C., Erchegyi, J., Reubi, J.C., Rivier, J.E., Riek, R.

(2005) J Med Chem 48: 523-533

Released	2005-02-15
Method	SOLUTION NMR
Macromolecule	SST1-selective somatosatin analog (protein)

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1XY6	Download File View File

NMR strcutre of sst1-selective somatostatin (SRIF) analog 1

Grace, C.R.R., Durrer, L., Koerber, S.C., Erchegyi, J., Reubi, J.C., Rivier, J.E., Riek, R.

(2005) J Med Chem 48: 523-533

Released	2005-02-15
Method	SOLUTION NMR
Macromolecule	SST1-selective somatosatin analog (protein)

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1XY8	Download File View File

NMR strcutre of sst1-selective somatostatin (SRIF) analog 1

Grace, C.R.R., Durrer, L., Koerber, S.C., Erchegyi, J., Reubi, J.C., Rivier, J.E., Riek, R.

(2005) J Med Chem 48: 523-533

Released	2005-02-15
Method	SOLUTION NMR
Macromolecule	SST1-selective somatosatin analog (protein)

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1XY9	Download File View File

NMR strcutre of sst1-selective somatostatin (SRIF) analog 1

Grace, C.R.R., Durrer, L., Koerber, S.C., Erchegyi, J., Reubi, J.C., Rivier, J.E., Riek, R.

(2005) J Med Chem 48: 523-533

Released	2005-02-15
Method	SOLUTION NMR
Macromolecule	SST1-selective somatosatin analog (protein)

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1YL8	Download File View File

3D Solution Structure of [Tyr3]Octreotate derivatives in DMSO

Spyroulias, G.A., Galanis, A.S., Petrou, C., Vahliotis, D., Sotiriou, P., Nikolopoulou, A., Nock, B., Maina, T., Cordopatis, P.

(2005) Med Chem 1: 487-499

Released	2005-09-20
Method	SOLUTION NMR
Macromolecule	[Tyr3]Octreotate peptide (protein)

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1YL9	Download File View File

3D Solution Structure of [Tyr3]Octreotate derivatives in DMSO

Spyroulias, G.A., Galanis, A.S., Petrou, C., Vahliotis, D., Sotiriou, P., Nikolopoulou, A., Nock, B., Maina, T., Cordopatis, P.

(2005) Med Chem 1: 487-499

Released	2005-09-20
Method	SOLUTION NMR
Macromolecule	[Tyr3]Octreotate (protein)
Unique Ligands	CH4

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2JUE	Download File View File

Solution structure of the all-D kalata B1

Daly, N.L., Sando, L., Craik, D.

(2011) Chembiochem 12: 2456-2462

Released	2008-08-05
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Kalata-B1 (protein)

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2M6G	Download File View File

Solution structure of cis(C2-P3) trans (D5-P6) form of lO959 in water

Sonti, R.

(2013) Chemistry 19: 15175-15189

Released	2013-10-30
Method	SOLUTION NMR
Organisms	Conus buxeus loroisii
Macromolecule	Contryphan-Lo (protein)

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2M6H	Download File View File

Solution structure of trans(C2-P3) trans (D5-P6) of LO959 in methanol

Sonti, R.

(2013) Chemistry 19: 15175-15189

Released	2013-10-30
Method	SOLUTION NMR
Organisms	Conus buxeus loroisii
Macromolecule	Contryphan-Lo (protein)

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2N5Y	Download File View File

Solution NMR structure of octyl-tridecaptin A1 in DPC micelles containing Gram-negative lipid II

Cochrane, S.A., Findlay, B., Bakhtiary, A., Rodriguez-Lopez, E.M., Vederas, J.C.

(2016) Proc Natl Acad Sci U S A 113: 11561-11566

Released	2016-09-28
Method	SOLUTION NMR
Macromolecule	Octyl-tridecaptin A1 (protein)

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2Q33	Download File View File

Crystal structure of all-D monellin at 1.8 A resolution

Hung, L.-W., Kohmura, M., Ariyoshi, Y., Kim, S.-H.

(1998) Acta Crystallogr D Biol Crystallogr 54: 494-500

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	D-MONELLIN CHAIN A (protein) D-MONELLIN CHAIN B (protein)

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2Q3I	Download File View File

Crystal structure of the D10-P3/IQN17 complex: a D-peptide inhibitor of HIV-1 entry bound to the GP41 coiled-coil pocket

Malashkevich, V.N., Eckert, D.M., Hong, L.H., Carr, P.A., Kim, P.S.

(1999) Cell 99: 103-105

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus type 1
Macromolecule	D-peptide (protein) Fusion protein between the Coiled-Coil pocket of HIV GP41 and gcn4-PIQI (protein)
Unique Ligands	CL

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2R3C	Download File View File

Structure of the gp41 N-peptide in complex with the HIV entry inhibitor PIE1

VanDemark, A.P., Welch, B., Heroux, A., Hill, C.P., Kay, M.S.

(2007) Proc Natl Acad Sci U S A 104: 16828-16833

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	synthetic construct
Macromolecule	HIV entry inhibitor PIE1 (protein) gp41 N-peptide (protein)
Unique Ligands	CL, YT3

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2R5B	Download File View File

Structure of the gp41 N-trimer in complex with the HIV entry inhibitor PIE7

VanDemark, A.P., Welch, B., Heroux, A., Hill, C.P., Kay, M.S.

(2007) Proc Natl Acad Sci U S A 104: 16828-16833

Released	2007-10-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	synthetic construct
Macromolecule	HIV entry inhibitor PIE7 (protein) gp41 N-peptide (protein)
Unique Ligands	SO4

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2R5D	Download File View File

Structure of the gp41 N-trimer in complex with the HIV entry inhibitor PIE7

VanDemark, A.P., Welch, B., Heroux, A., Hill, C.P., Kay, M.S.

(2007) Proc Natl Acad Sci U S A 104: 16828-16833

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	synthetic construct
Macromolecule	HIV entry inhibitor PIE7 (protein) gp41 N-peptide (protein)
Unique Ligands	EPE, GOL, SO4

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2SOC	Download File View File

NMR STUDY OF THE BACKBONE CONFORMATIONAL EQUILIBRIA OF SANDOSTATIN, TWO REPRESENTATIVE MINIMUM ENERGY PARTIALLY HELICAL STRUCTURES

Melacini, G., Zhu, Q., Goodman, M.

(1997) Biochemistry 36: 1233-1241

Released	1997-04-21
Method	SOLUTION NMR
Macromolecule	SANDOSTATIN (protein)

1 to 25 of 112 Structures

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