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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "HPD"

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Search Summary

This query matches 5 Structures.

Refinements

Structure Determination Methodology

experimental (5)

Scientific Name of Source Organism

Geobacillus stearothermophilus (5)

Taxonomy

Bacteria (5)

Experimental Method

X-RAY DIFFRACTION (5)

Polymer Entity Type

	DNA (5)
	Protein (5)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (1)

Enzyme Classification Name

	Hydrolases (4)
	Lyases (2)

Symmetry Type

Asymmetric (5)

SCOP Classification

	All alpha proteins (5)
	All beta proteins (3)
	Small proteins (3)
	Alpha and beta proteins (a+b) (2)

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1 to 5 of 5 Structures

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1L1T	Download File View File

MutM (Fpg) Bound to Abasic-Site Containing DNA

Fromme, J.C., Verdine, G.L.

(2002) Nat Struct Biol 9: 544-552

Released	2002-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCGPTPCPCPAP(HPD)PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1L2C	Download File View File

MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex

Fromme, J.C., Verdine, G.L.

(2002) Nat Struct Biol 9: 544-552

Released	2002-06-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGGPTPAPGPAPCPTPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCGPTPCPCPAP(HPD)PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1L2D	Download File View File

MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex

Fromme, J.C., Verdine, G.L.

(2002) Nat Struct Biol 9: 544-552

Released	2002-06-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGGPTPAPGPAPCPGPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCGPTPCPCPAP(HPD)PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1RRS	Download File View File

MutY adenine glycosylase in complex with DNA containing an abasic site

Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.

(2004) Nature 427: 652-656

Released	2004-02-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutY (protein) 5'-D(APAPGPAPCP(8OG)PTPGPGPAPC)-3' (nucleic acid) 5'-D(TPGPTPCPCPAP(HPD)PGPTPCPT)-3' (nucleic acid)
Unique Ligands	CA, SF4

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1VRL	Download File View File

MutY adenine glycosylase in complex with DNA and soaked adenine free base

Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.

(2004) Nature 427: 652-656

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutY (protein) 5'-D(APAPGPAPCP(8OG)PTPGPGPAPC)-3' (nucleic acid) 5'-D(TPGPTPCPCPAP(HPD)PGPTPCPT)-3' (nucleic acid)
Unique Ligands	ADE, CA, SF4

1 to 5 of 5 Structures

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