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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "SPD"

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This query matches 2 Structures.

Refinements

Structure Determination Methodology

experimental (2)

Scientific Name of Source Organism

	Dengue virus (1)
	Homo sapiens (1)
	unidentified (1)

Taxonomy

	Eukaryota (1)
	Riboviria (1)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (2)

Polymer Entity Type

	Protein (2)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (1)

Symmetry Type

	Asymmetric (2)
	Dihedral (1)

SCOP Classification

Alpha and beta proteins (a/b) (1)

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2XBM	Download File View File

Crystal structure of the dengue virus methyltransferase bound to a 5'- capped octameric RNA

Yap, L.J., Luo, D.H., Chung, K.Y., Lim, S.P., Bodenreider, C., Noble, C., Shi, P.Y., Lescar, J.

(2010) PLoS One 5: 12836

Released	2010-09-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Dengue virus
Macromolecule	NONSTRUCTURAL PROTEIN NS5 (protein) 5'-(G3APGPAPAPCPCPUPGP*A)-3' (nucleic acid)
Unique Ligands	GOL, SAH, SO4

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5UDJ	Download File View File

IFIT1 monomeric mutant (L457E/L464E) with Gppp-AAAA

Abbas, Y.M., Martinez-Montero, S., Damha, M.J., Nagar, B.

(2017) Proc Natl Acad Sci U S A 114: E2106-E2115

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens unidentified
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 1 (protein) RNA (5'-D((G3A))-R(PAPAPA)-3') (nucleic acid)
Unique Ligands	CA, PGE

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

2XBM

Crystal structure of the dengue virus methyltransferase bound to a 5'- capped octameric RNA

5UDJ

IFIT1 monomeric mutant (L457E/L464E) with Gppp-AAAA