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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 19363482

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (10)
	Escherichia coli K-12 (9)
	Homo sapiens (4)
	Sus scrofa (4)
	synthetic construct (4)
	Escherichia coli (3)
	Oryctolagus cuniculus (2)
	Bos taurus (1)
	Canis lupus familiaris (1)
	Haloarcula marismortui (1)

Taxonomy

	Eukaryota (11)
	Bacteria (10)
	other sequences (4)
	Archaea (1)

Experimental Method

	ELECTRON MICROSCOPY (11)
	X-RAY DIFFRACTION (10)

Polymer Entity Type

	Protein (21)
	RNA (16)

Refinement Resolution (Å)

	3.0 - 3.5 (11)
	3.5 - 4.0 (9)
	> 4.5 (1)

Release Date

	2010 - 2014 (14)
	2015 - 2019 (3)
	2020 - 2024 (4)

Enzyme Classification Name

	Lyases (2)
	Hydrolases (1)

Membrane Protein Annotation

	OPM (4)
	MemProtMD (3)
	PDBTM (3)
	mpstruc (2)

Symmetry Type

Asymmetric (21)

AllSelected

1 to 21 of 21 Structures

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3J7O	Download File View File

Structure of the mammalian 60S ribosomal subunit

Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.

(2014) Cell 157: 1632-1643

Released	2014-09-03
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 42 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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3J7P	Download File View File

Structure of the 80S mammalian ribosome bound to eEF2

Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.

(2014) Cell 157: 1632-1643

Released	2014-09-03
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 78 Unique nucleic acid chains: 4
Unique Ligands	MG, ZN

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3J7Q	Download File View File

Structure of the idle mammalian ribosome-Sec61 complex

Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.

(2014) Cell 157: 1632-1643

Released	2014-09-03
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 45 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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3J7R	Download File View File

Structure of the translating mammalian ribosome-Sec61 complex

Voorhees, R.M., Fernandez, I.S., Scheres, S.H.W., Hegde, R.S.

(2014) Cell 157: 1632-1643

Released	2014-09-03
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 79 Unique nucleic acid chains: 7
Unique Ligands	MG, ZN

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3JAJ	Download File View File

Structure of the engaged state of the mammalian SRP-ribosome complex

Voorhees, R.M., Hegde, R.S.

(2015) Elife 4:

Released	2015-08-05
Method	ELECTRON MICROSCOPY 3.75 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Unique protein chains: 83 Unique nucleic acid chains: 6
Unique Ligands	MG, ZN

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3JAN	Download File View File

Structure of the scanning state of the mammalian SRP-ribosome complex

Voorhees, R.M., Hegde, R.S.

(2015) Elife 4:

Released	2015-08-05
Method	ELECTRON MICROSCOPY 3.75 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Unique protein chains: 82 Unique nucleic acid chains: 6
Unique Ligands	MG, ZN

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3JC2	Download File View File

The structure of the mammalian Sec61 channel opened by a signal sequence

Voorhees, R.M., Hegde, R.S.

(2016) Science 351: 88-91

Released	2016-01-13
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Bos taurus Canis lupus familiaris
Macromolecule	Prolactin (protein) Protein transport protein Sec61 subunit alpha isoform 1 (protein) Protein transport protein Sec61 subunit beta (protein) Protein transport protein Sec61 subunit gamma (protein)

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4V5C	Download File View File

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Voorhees, R.M., Weixlbaumer, A., Loakes, D., Kelley, A.C., Ramakrishnan, V.

(2009) Nat Struct Mol Biol 16: 528-533

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 7
Unique Ligands	MG, PAR, ZN

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4V5D	Download File View File

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Voorhees, R.M., Weixlbaumer, A., Loakes, D., Kelley, A.C., Ramakrishnan, V.

(2009) Nat Struct Mol Biol 16: 528-533

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	MG, PAR, ZN

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4V5E	Download File View File

Insights into translational termination from the structure of RF2 bound to the ribosome

Weixlbaumer, A., Jin, H., Neubauer, C., Voorhees, R.M., Petry, S., Kelley, A.C., Ramakrishnan, V.

(2008) Science 322: 953-956

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 54 Unique nucleic acid chains: 5
Unique Ligands	MG, ZN

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4V5G	Download File View File

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.

(2009) Science 326: 688-694

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6
Unique Ligands	GDP, KIR, MG, PAR, ZN

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4V5L	Download File View File

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Voorhees, R.M., Schmeing, T.M., Ramakrishnan, V.

(2010) Science 330: 835

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6
Unique Ligands	GCP, MG, PAR, ZN

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4V5P	Download File View File

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.

(2011) Nat Struct Mol Biol 18: 432

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli Escherichia coli K-12 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6
Unique Ligands	GDP, KIR, ZN

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4V5Q	Download File View File

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.

(2011) Nat Struct Mol Biol 18: 432

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli Escherichia coli K-12 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6
Unique Ligands	GDP, KIR, ZN

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4V5R	Download File View File

The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.

(2011) Nat Struct Mol Biol 18: 432

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6
Unique Ligands	GDP, KIR, ZN

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4V5S	Download File View File

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.

(2011) Nat Struct Mol Biol 18: 432

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6
Unique Ligands	GDP, KIR, ZN

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4V8N	Download File View File

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Voorhees, R.M., Mandal, D., Neubauer, C., Koehrer, C., RajBhandary, U.L., Ramakrishnan, V.

(2013) Nat Struct Mol Biol 20: 641

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli Haloarcula marismortui Thermus thermophilus HB8
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 6
Unique Ligands	ZN

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6WW7	Download File View File

Structure of the human ER membrane protein complex in a lipid nanodisc

Tomaleri, G.P., Januszyk, K., Pleiner, T., Inglis, A.J., Voorhees, R.M.

(2020) Science 369: 433-436

Released	2020-05-27
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8S9S	Download File View File

Structure of the human ER membrane protein complex (EMC) in GDN

Tomaleri, G.P., Nguyen, V.N., Voorhees, R.M.

(2023) J Cell Biol 222:

Released	2023-05-17
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9
Unique Ligands	NAG, PCW
Unique branched monosaccharides	NAG

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9C7U	Download File View File

Structure of the human truncated BOS complex in GDN

Nguyen, V.N., Tomaleri, G.P., Voorhees, R.M.

(2024) Mol Cell 84: 3302

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.65 Å
Organisms	Homo sapiens
Macromolecule	BOS complex subunit NOMO2 (protein) Nicalin (protein) Transmembrane protein 147 (protein)
Unique Ligands	NAG

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9C7V	Download File View File

Structure of the human BOS:human EMC complex in GDN

Nguyen, V.N., Tomaleri, G.P., Voorhees, R.M.

(2024) Mol Cell 84: 3302

Released	2024-08-21
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 12
Unique Ligands	NAG
Unique branched monosaccharides	NAG

1 to 21 of 21 Structures

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