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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 30150473

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

Klebsiella pneumoniae (14)

Taxonomy

Bacteria (14)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (7)
	1.5 - 2.0 (2)

Release Date

2015 - 2019 (14)

Enzyme Classification Name

Hydrolases (14)

Symmetry Type

Asymmetric (14)

SCOP Classification

Alpha and beta proteins (a+b) (14)

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1 to 14 of 14 Structures

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Explore in 3D

5ZGE \| pdb_00005zge	Download File View File

Crystal structure of NDM-1 at pH5.5 (Bis-Tris) in complex with hydrolyzed ampicillin

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 1 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	OH, ZN, ZZ7

Explore in 3D

5ZGF \| pdb_00005zgf	Download File View File

Crystal structure of NDM-1 Q123G mutant

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	OH, ZN

Explore in 3D

5ZGI \| pdb_00005zgi	Download File View File

Crystal structure of NDM-1 at pH6.5 (Succinate) with 1 molecule per asymmetric unit

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EDO, OH, SIN, ZN

Explore in 3D

5ZGP \| pdb_00005zgp	Download File View File

Crystal structure of NDM-1 at pH6.2 (Bis-Tris) in complex with hydrolyzed ampicillin

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	GOL, PEG, ZN, ZZ7

Explore in 3D

5ZGQ \| pdb_00005zgq	Download File View File

Crystal structure of NDM-1 at pH7.5 (Tris-HCl, (NH4)2SO4) in complex with hydrolyzed ampicillin

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	OH, ZN, ZZ7

Explore in 3D

5ZGR \| pdb_00005zgr	Download File View File

Crystal structure of NDM-1 at pH7.3 (HEPES) in complex with hydrolyzed ampicillin

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	GOL, ZN, ZZ7

Explore in 3D

5ZGT \| pdb_00005zgt	Download File View File

Crystal structure of NDM-1 at pH7.5 (HEPES) with 2 molecules per asymmetric unit

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	GOL, OH, ZN

Explore in 3D

5ZGU \| pdb_00005zgu	Download File View File

Crystal structure of NDM-1 at pH7.0 (HEPES) with 2 molecules per asymmetric unit

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EPE, GOL, OH, ZN

Explore in 3D

5ZGV \| pdb_00005zgv	Download File View File

Crystal structure of NDM-1 at pH8.0 (Tris) with 2 molecules per asymmetric unit

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	GOL, OH, ZN

Explore in 3D

5ZGW \| pdb_00005zgw	Download File View File

Crystal structure of NDM-1 at pH7.5 with 1 molecule per asymmetric unit (crystallized at succinate pH5.5 and soaked at succinate pH7.5)

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EDO, GOL, OH, ZN

Explore in 3D

5ZGX \| pdb_00005zgx	Download File View File

Crystal structure of NDM-1 at pH7.5 (Succinate) with 1 molecule per asymmetric unit

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EDO, OH, ZN

Explore in 3D

5ZGY \| pdb_00005zgy	Download File View File

Crystal structure of NDM-1 at pH7.5 (Bis-Tris) with 1 molecule per asymmetric unit

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EDO, OH, ZN

Explore in 3D

5ZGZ \| pdb_00005zgz	Download File View File

Crystal structure of NDM-1 at pH7.5 (Imidazole) with 1 molecule per asymmetric unit

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	EDO, OH, ZN

Explore in 3D

5ZH1 \| pdb_00005zh1	Download File View File

Crystal structure of NDM-1 at pH7.5 (Imidazole) with 2 molecules per asymmetric unit

Zhang, H., Hao, Q.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	IMD, OH, ZN

1 to 14 of 14 Structures

Page 1 of 1

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5ZGE | pdb_00005zge

Crystal structure of NDM-1 at pH5.5 (Bis-Tris) in complex with hydrolyzed ampicillin

5ZGF | pdb_00005zgf

Crystal structure of NDM-1 Q123G mutant

5ZGI | pdb_00005zgi

Crystal structure of NDM-1 at pH6.5 (Succinate) with 1 molecule per asymmetric unit

5ZGP | pdb_00005zgp

Crystal structure of NDM-1 at pH6.2 (Bis-Tris) in complex with hydrolyzed ampicillin

5ZGQ | pdb_00005zgq

Crystal structure of NDM-1 at pH7.5 (Tris-HCl, (NH4)2SO4) in complex with hydrolyzed ampicillin

5ZGR | pdb_00005zgr

Crystal structure of NDM-1 at pH7.3 (HEPES) in complex with hydrolyzed ampicillin

5ZGT | pdb_00005zgt

Crystal structure of NDM-1 at pH7.5 (HEPES) with 2 molecules per asymmetric unit

5ZGU | pdb_00005zgu

Crystal structure of NDM-1 at pH7.0 (HEPES) with 2 molecules per asymmetric unit

5ZGV | pdb_00005zgv

Crystal structure of NDM-1 at pH8.0 (Tris) with 2 molecules per asymmetric unit

5ZGW | pdb_00005zgw

Crystal structure of NDM-1 at pH7.5 with 1 molecule per asymmetric unit (crystallized at succinate pH5.5 and soaked at succinate pH7.5)

5ZGX | pdb_00005zgx

Crystal structure of NDM-1 at pH7.5 (Succinate) with 1 molecule per asymmetric unit

5ZGY | pdb_00005zgy

Crystal structure of NDM-1 at pH7.5 (Bis-Tris) with 1 molecule per asymmetric unit

5ZGZ | pdb_00005zgz

Crystal structure of NDM-1 at pH7.5 (Imidazole) with 1 molecule per asymmetric unit

5ZH1 | pdb_00005zh1

Crystal structure of NDM-1 at pH7.5 (Imidazole) with 2 molecules per asymmetric unit

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

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Refinement Resolution (Å)

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Enzyme Classification Name

Symmetry Type

SCOP Classification

5ZGE | pdb_00005zge

5ZGF | pdb_00005zgf

5ZGI | pdb_00005zgi

5ZGP | pdb_00005zgp

5ZGQ | pdb_00005zgq

5ZGR | pdb_00005zgr

5ZGT | pdb_00005zgt

5ZGU | pdb_00005zgu

5ZGV | pdb_00005zgv

5ZGW | pdb_00005zgw

5ZGX | pdb_00005zgx

5ZGY | pdb_00005zgy

5ZGZ | pdb_00005zgz

5ZH1 | pdb_00005zh1