RCSB PDB: Search

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Structure Keywords HAS EXACT PHRASE "RIBOSOME/ANTIBIOTIC"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Search Summary

This query matches 109 Structures.

AllSelected

Explore in 3D

1N8R	Download File View File

Structure of large ribosomal subunit in complex with virginiamycin M

Hansen, J.L., Moore, P.B., Steitz, T.A.

(2003) J Mol Biol 330: 1061-1075

Released	2003-07-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	CD, CL, K, MG, NA, VIR

Explore in 3D

1OLN	Download File View File

Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA

Lentzen, G., Klinck, R., Matassova, N., Aboul-Ela, F., Murchie, A.I.H.

(2003) Chem Biol 10: 769

Released	2003-09-11
Method	SOLUTION NMR THEORETICAL MODEL
Organisms	Streptomyces azureus Thermotoga maritima
Macromolecule	50S RIBOSOMAL PROTEIN L11 (protein) THIOSTREPTON (protein) RNA (nucleic acid)

Explore in 3D

1SM1	Download File View File

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Harms, J.M., Schluenzen, F., Fucini, P., Bartels, H., Yonath, A.

(2004) BMC Biol 2: 4

Released	2004-08-03
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Deinococcus radiodurans Streptomyces graminofaciens
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	DOL

Explore in 3D

1YIT	Download File View File

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Tu, D., Blaha, G., Moore, P.B., Steitz, T.A.

(2005) Cell 121: 257

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Haloarcula marismortui Streptomyces virginiae
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	CD, CL, K, MG, NA, VIR

Explore in 3D

1YJW	Download File View File

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Tu, D., Blaha, G., Moore, P.B., Steitz, T.A.

(2005) Cell 121: 257

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Haloarcula marismortui Streptomyces graminofaciens
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	CD, CL, K, MG, NA

Explore in 3D

2JQ7	Download File View File

Model for thiostrepton binding to the ribosomal L11-RNA

Jonker, H.R.A., Ilin, S., Grimm, S.K., Woehnert, J., Schwalbe, H.

(2007) Nucleic Acids Res 35: 441

Released	2007-07-03
Method	SOLUTION NMR
Organisms	Escherichia coli Streptomyces azureus Thermotoga maritima
Macromolecule	50S RIBOSOMAL PROTEIN L11 (protein) THIOSTREPTON (protein) RIBOSOMAL RNA (nucleic acid)

Explore in 3D

2ZJP	Download File View File

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.

(2008) Mol Cell 30: 26

Released	2008-06-17
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Deinococcus radiodurans Streptomyces actuosus
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	MG, NO1, ZN

Explore in 3D

3CF5	Download File View File

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.

(2008) Mol Cell 30: 26

Released	2008-06-17
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Deinococcus radiodurans Streptomyces azureus
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	MG

Explore in 3D

3I55	Download File View File

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Gurel, G., Blaha, G., Steitz, T.A., Moore, P.B.

(2009) Antimicrob Agents Chemother 53: 5010-5014

Released	2010-03-09
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Haloarcula marismortui Haloarcula marismortui ATCC 43049
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2 Unique nucleic acid hybrid chains: 1
Unique Ligands	CD, CL, K, MG, MYL, NA, SR

Explore in 3D

3I56	Download File View File

Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit

Gurel, G., Blaha, G., Steitz, T.A., Moore, P.B.

(2009) Antimicrob Agents Chemother 53: 5010-5014

Released	2010-03-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Haloarcula marismortui Haloarcula marismortui ATCC 43049
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	CD, CL, K, MG, NA, SR, TAO

Explore in 3D

3J5L	Download File View File

Structure of the E. coli 50S subunit with ErmBL nascent chain

Arenz, S., Ramu, H., Gupta, P., Berninghausen, O., Beckmann, R., Vazquez-Laslop, N., Mankin, A.S., Wilson, D.N.

(2014) Nat Commun 5: 3501-3501

Released	2014-03-26
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Escherichia coli K-12 Streptococcus sanguinis
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 4
Unique Ligands	ERY, UNL

Explore in 3D

3J7Z	Download File View File

Structure of the E. coli 50S subunit with ErmCL nascent chain

Arenz, S., Meydan, S., Starosta, A.L., Berninghausen, O., Beckmann, R., Vazquez-Laslop, N., Wilson, D.N.

(2014) Mol Cell 56: 446-452

Released	2014-10-22
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Escherichia coli K-12 Staphylococcus aureus
Macromolecule	Unique protein chains: 32 Unique nucleic acid chains: 3
Unique Ligands	ERY

Explore in 3D

3PIO	Download File View File

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Belousoff, M.J., Shapira, T., Bashan, A., Zimmerman, E., Arakawa, K., Kinashi, H., Rozenberg, H., Yonath, A.

(2011) Proc Natl Acad Sci U S A 108: 2717-2722

Released	2011-02-23
Method	X-RAY DIFFRACTION 3.2473 Å
Organisms	Deinococcus radiodurans Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	K, LMA, MG, NA

Explore in 3D

3PIP	Download File View File

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Belousoff, M.J., Shapira, T., Bashan, A., Zimmerman, E., Kinashi, H., Rozenberg, H., Yonath, A.

(2011) Proc Natl Acad Sci U S A 108: 2717-2722

Released	2011-02-23
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Deinococcus radiodurans Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	K, LC2, LMA, MG, NA

Explore in 3D

3T1H	Download File View File

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Murphy, F.V., Vendeix, F.A.P., Cantara, W., Leszczynska, G., Gustilo, E.M., Sproat, B., Malkiewicz, A.A.P., Agris, P.F.

(2012) J Mol Biol 416: 467-485

Released	2012-01-25
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Thermus thermophilus Thermus thermophilus HB27 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	MG, PAR, ZN

Explore in 3D

3T1Y	Download File View File

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

Murphy, F.V., Vendeix, F.A.P., Cantara, W., Leszczynska, G., Gustilo, E.M., Sproat, B., Malkiewicz, A.A.P., Agris, P.F.

(2012) J Mol Biol 416: 467-485

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus Thermus thermophilus HB27 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	MG, PAR, ZN

Explore in 3D

4DR2	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.249 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, PAR, ZN

Explore in 3D

4DR3	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with streptomycin bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.348 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DR4	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.969 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	MG, PAR, ZN

Explore in 3D

4DR5	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DR6	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 5
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DR7	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.75 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 5
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DUZ	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.651 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DV1	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.849 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DV3	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.547 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN