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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "Transferase/DNA"

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (39)
	synthetic construct (35)
	Halalkalibacterium halodurans C-125 (4)
	Saccharolobus solfataricus P2 (2)

Taxonomy

	Eukaryota (39)
	other sequences (35)
	Bacteria (4)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (45)
	SOLUTION NMR (1)

Polymer Entity Type

	DNA (46)
	Protein (45)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (19)
	2.0 - 2.5 (12)
	2.5 - 3.0 (10)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (10)
	2015 - 2019 (34)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (41)
	Hydrolases (4)

Symmetry Type

Asymmetric (45)

SCOP Classification

Alpha and beta proteins (a/b) (4)

AllSelected

1 to 25 of 46 Structures

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2KK5	Download File View File

High Fidelity Base Pairing at the 3'-Terminus

Patra, A., Richert, C.

(2009) J Am Chem Soc 131: 12671-12681

Released	2009-07-21
Method	SOLUTION NMR
Macromolecule	5'-D(APCPGPCPGP(2AU))-3' (nucleic acid)
Unique Ligands	AQC

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4HTU	Download File View File

Structure of 5-chlorouracil modified A:U base pair

Patra, A., Egli, M.

(2013) Nucleic Acids Res 41: 2689-2697

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.489 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPCPGPAPAPTP(UCL)PCPGPCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, MG

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4HUE	Download File View File

Structure of 5-chlorouracil modified G:U base pair

Patra, A., Egli, M.

(2013) Nucleic Acids Res 41: 2689-2697

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.561 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPCPGPAPAPTPTP(UCL)PGPCPG)-3') (nucleic acid)
Unique Ligands	GOL, MG

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4HUF	Download File View File

Structure of 5-chlorouracil modified A:U base pair

Patra, A., Egli, M.

(2013) Nucleic Acids Res 41: 2689-2697

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPCPGPAPAP(UCL)PTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, MG

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4HUG	Download File View File

Structure of 5-chlorouracil modified A:U base pairs

Patra, A., Egli, M.

(2013) Nucleic Acids Res 41: 2689-2697

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Ribonuclease H (protein) DNA (5'-D(CPGPCPGPAPAP(UCL)P(UCL)PCPGPCPG)-3') (nucleic acid)
Unique Ligands	EDO, GOL, MG

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4O3N	Download File View File

Crystal structure of human dna polymerase eta in ternary complex with native dna and incoming nucleotide (dcp)

Patra, A., Egli, M.

(2014) J Biol Chem 289: 16867-16882

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.579 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPGPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	0KX, GOL, MG

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4O3O	Download File View File

Crystal structure of human polymerase eta inserting datp opposite an 8-oxog containing dna template

Patra, A., Egli, M.

(2014) J Biol Chem 289: 16867-16882

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.698 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(8OG)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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4O3P	Download File View File

Crystal structure of human polymerase eta inserting dctp opposite an 8-oxog containing dna template

Patra, A., Egli, M.

(2014) J Biol Chem 289: 16867-16882

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(8OG)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	0KX, GOL, MG

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4O3Q	Download File View File

Crystal structure of human polymerase eta inserting dgtp opposite an 8-oxog containing dna template

Patra, A., Egli, M.

(2014) J Biol Chem 289: 16867-16882

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(8OG)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	GOL, MG, XG4

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4O3R	Download File View File

Crystal structure of human polymerase eta extending an 8-oxog dna lesion: post insertion of 8-oxog-da pair

Patra, A., Egli, M.

(2014) J Biol Chem 289: 16867-16882

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPA)-3') (nucleic acid) DNA (5'-D(CPAPTPGP(8OG)PTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	0KX, GOL, MG

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4O3S	Download File View File

Crystal structure of human polymerase eta extending an 8-oxog dna lesion: post insertion of 8-oxog-dc pair

Patra, A., Egli, M.

(2014) J Biol Chem 289: 16867-16882

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.717 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPC)-3') (nucleic acid) DNA (5'-D(CPAPTPGP(8OG)PTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	0KX, GOL, MG

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4RNM	Download File View File

Crystal structure of human polymerase eta inserting dAMPnPP opposite DNA template containing an abasic site

Patra, A., Egli, M.

(2015) J Biol Chem 290: 8028-8038

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.144 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA Primar: AGCGTCAT (nucleic acid) DNA Template: CAT(3DR)ATGACGCT (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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4RNN	Download File View File

Crystal structure of human polymerase eta inserting dGMPnPP opposite DNA template containing an abasic site

Patra, A., Egli, M.

(2015) J Biol Chem 290: 8028-8038

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.808 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) Nucleic acids Primar: AGCGTCAT (nucleic acid) Nucleic acids Template: CAT(3DR)ATGACGCT (nucleic acid)
Unique Ligands	GOL, MG, XG4

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4RNO	Download File View File

Crystal structure of human polymerase eta extending an abasic site-dA pair by inserting dCTP opposite template G

Patra, A., Egli, M.

(2015) J Biol Chem 290: 8028-8038

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) Nucleic acids Primar: AGCGTCAA (nucleic acid) Nucleic acids Template: CATG(3DR)TGACGCT (nucleic acid)
Unique Ligands	CA, DCP, GOL

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4RU9	Download File View File

Crystal structure of human DNA polymerase eta inserting dCMPNPP opposite a MeFapy-dG adducted DNA template

Patra, A., Egli, M.

(2015) J Am Chem Soc 137: 7011-7014

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) Nucleic acids Primar: AGCGTCAT (nucleic acid) Nucleic acids Template: CAT(MF7)ATGACGCT (nucleic acid)
Unique Ligands	0KX, MG

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4RUA	Download File View File

Crystal structure of Y-family DNA polymerase Dpo4 bypassing a MeFapy-dG adduct

Patra, A., Banerjee, S., Stone, M.P., Egli, M.

(2015) J Am Chem Soc 137: 7011-7014

Released	2015-08-05
Method	X-RAY DIFFRACTION 3.07 Å
Organisms	Saccharolobus solfataricus P2 synthetic construct
Macromolecule	DNA polymerase IV (protein) Nucleic acids Primar: GGGGGAAGGATTC (nucleic acid) Nucleic acids Template: TCAT(MF7)GAATCCTTCCCCC (nucleic acid)
Unique Ligands	CA, DTP

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4RUC	Download File View File

Crystal structure of Y-family DNA polymerase Dpo4 extending from a MeFapy-dG:dC pair

Patra, A., Banerjee, S., Stone, M.P., Egli, M.

(2015) J Am Chem Soc 137: 7011-7014

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharolobus solfataricus P2 synthetic construct
Macromolecule	DNA polymerase IV (protein) Nucleic acids Primar: GGGGGAAGGATTAC (nucleic acid) Nucleic acids Template: TCAT(MF7)TAATCCTTCCCCC (nucleic acid)
Unique Ligands	CA, DTP

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4YP3	Download File View File

Mutant Human DNA Polymerase Eta Q38A/R61A Inserting dCTP Opposite an 8-Oxoguanine Lesion

Su, Y., Patra, A., Harp, J.M., Egli, M., Guengerich, F.P.

(2015) J Biol Chem 290: 15921-15933

Released	2015-05-13
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(TP(8OG)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, DCP, GOL

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4YQW	Download File View File

Mutant Human DNA Polymerase Eta Q38A/R61A Inserting dCTP Opposite Template G

Su, Y., Patra, A., Harp, J.M., Egli, M., Guengerich, F.P.

(2015) J Biol Chem 290: 15921-15933

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.064 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(APTPGPAPTPGPAPCPGPCP*T)-3') (nucleic acid)
Unique Ligands	CA, DCP, GOL

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4YR0	Download File View File

Mutant Human DNA Polymerase Eta R61M Inserting dCTP Opposite an 8-Oxoguanine Lesion

Su, Y., Patra, A., Harp, J.M., Egli, M., Guengerich, F.P.

(2015) J Biol Chem 290: 15921-15933

Released	2015-05-13
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(PTP(8OG)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, DCP, GOL

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4YR2	Download File View File

Mutant Human DNA Polymerase Eta R61M Inserting dATP Opposite an 8-Oxoguanine Lesion

Su, Y., Patra, A., Harp, J.M., Egli, M., Guengerich, F.P.

(2015) J Biol Chem 290: 15921-15933

Released	2015-05-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(APTP(8OG)PAPTPGPAPCPGPCP*T)-3') (nucleic acid)
Unique Ligands	CA, DTP, GOL

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4YR3	Download File View File

Mutant Human DNA Polymerase Eta R61M Inserting dCTP Opposite Template G

Su, Y., Patra, A., Harp, J.M., Egli, M., Guengerich, F.P.

(2015) J Biol Chem 290: 15921-15933

Released	2015-05-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(PTPGPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, DCP

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5DG7	Download File View File

CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dTTP ACROSS A DNA TEMPLATE CONTAINING 1,N6-ETHENODEOXYADENOSINE LESION

Patra, A., Egli, M.

(2016) J Biol Chem 291: 14134-14145

Released	2016-06-08
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(EDA)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, GOL, TTP

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5DG8	Download File View File

CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dAMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N6-ETHENODEOXYADENOSINE LESION

Patra, A., Egli, M.

(2016) J Biol Chem 291: 14134-14145

Released	2016-06-08
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(EDA)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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5DG9	Download File View File

CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dGMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N6-ETHENODEOXYADENOSINE LESION

Patra, A., Egli, M.

(2016) J Biol Chem 291: 14134-14145

Released	2016-06-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(EDA)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	GOL, MG, XG4