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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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MyPDB

QUERY: Structure Keywords HAS EXACT PHRASE "VIRAL PROTEIN,HYDROLASE/INHIBITOR"

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Search Summary

This query matches 167 Structures.

Refinements

Structure Determination Methodology

experimental (167)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (134)
	Influenza A virus (A/California/04/2009(H1N1)) (16)
	Severe acute respiratory syndrome-related coronavirus (6)
	hepatitis C virus genotype 1a (4)
	enterovirus D68 (3)
	Feline coronavirus (2)
	synthetic construct (2)
	Human immunodeficiency virus 1 (1)
	Porcine deltacoronavirus (1)
	Streptomyces exfoliatus (1)

Taxonomy

	Riboviria (167)
	other sequences (2)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (167)

Polymer Entity Type

Protein (167)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (85)
	2.0 - 2.5 (49)
	2.5 - 3.0 (19)
	3.0 - 3.5 (6)

Release Date

	2010 - 2014 (4)
	2020 - 2024 (153)
	2025 - 2029 (10)

Enzyme Classification Name

	Hydrolases (140)
	Transferases (3)

Symmetry Type

	Cyclic (125)
	Asymmetric (39)
	Dihedral (3)

SCOP Classification

	All beta proteins (25)
	Artifacts (3)

AllSelected

1 to 25 of 167 Structures

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3SV6 \| pdb_00003sv6	Download File View File

Crystal structure of NS3/4A protease in complex with Telaprevir

Schiffer, C.A., Romano, K.P.

(2012) PLoS Pathog 8: e1002832-e1002832

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	hepatitis C virus genotype 1a
Macromolecule	NS3 protease, NS4A protein (protein)
Unique Ligands	GOL, SO4, SV6, ZN

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3SV7 \| pdb_00003sv7	Download File View File

Crystal structure of NS3/4A protease variant R155K in complex with Telaprevir

Schiffer, C.A., Romano, K.P.

(2012) PLoS Pathog 8: e1002832-e1002832

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	hepatitis C virus genotype 1a
Macromolecule	NS3 protease, NS4A protein (protein)
Unique Ligands	SO4, SV6, ZN

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3SV8 \| pdb_00003sv8	Download File View File

Crystal structure of NS3/4A protease variant D168A in complex with Telaprevir

Schiffer, C.A., Romano, K.P.

(2012) PLoS Pathog 8: e1002832-e1002832

Released	2012-09-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	hepatitis C virus genotype 1a
Macromolecule	NS3 protease, NS4A protein (protein)
Unique Ligands	GOL, SV6, ZN

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3SV9 \| pdb_00003sv9	Download File View File

Crystal structure of NS3/4A protease variant A156T in complex with Telaprevir

Schiffer, C.A., Romano, K.P.

(2012) PLoS Pathog 8: e1002832-e1002832

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	hepatitis C virus genotype 1a
Macromolecule	NS3 protease, NS4A protein (protein)
Unique Ligands	GOL, SO4, SV6, ZN

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6XCH \| pdb_00006xch	Download File View File

Room-temperature X-ray Crystal structure of SARS-CoV-2 main protease in complex with Leupeptin

Kneller, D.W., Kovalevsky, A., Coates, L.

(2020) Structure 28: 1313

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Streptomyces exfoliatus
Macromolecule	3C-like proteinase (protein) Leupeptin (protein)

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7JP0 \| pdb_00007jp0	Download File View File

Crystal structure of Mpro with inhibitor r1

Yang, K., Liu, W.

To be published

Released	2021-10-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DMS, VJA

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7JPZ \| pdb_00007jpz	Download File View File

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI1

Yang, K., Liu, W.

(2021) ChemMedChem 16: 942-948

Released	2020-12-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	GHX

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7JQ0 \| pdb_00007jq0	Download File View File

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI3

Yang, K., Liu, W.

(2021) ChemMedChem 16: 942-948

Released	2020-12-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	VHV

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7JQ1 \| pdb_00007jq1	Download File View File

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI4

Yang, K., Liu, W.

(2021) ChemMedChem 16: 942-948

Released	2020-12-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	VHJ

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7JQ2 \| pdb_00007jq2	Download File View File

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI5

Yang, K., Liu, W.

(2021) ChemMedChem 16: 942-948

Released	2020-12-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	VHM

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7JQ3 \| pdb_00007jq3	Download File View File

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI6

Yang, K., Liu, W.

(2021) ChemMedChem 16: 942-948

Released	2020-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	VHP

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7JQ4 \| pdb_00007jq4	Download File View File

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI7

Yang, K., Liu, W.

(2021) ChemMedChem 16: 942-948

Released	2020-12-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	XM2

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7JQ5 \| pdb_00007jq5	Download File View File

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI8

Yang, K., Liu, W.

(2021) ChemMedChem 16: 942-948

Released	2020-12-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	NOL

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7JSU \| pdb_00007jsu	Download File View File

Crystal structure of SARS-CoV-2 3CL protease in complex with GC376

Iketani, S., Forouhar, F., Liu, H., Hong, S.J., Lin, F.-Y., Nair, M.S., Zask, A., Xing, L., Stockwell, B.R., Chavez, A., Ho, D.D.

(2021) Nat Commun 12: 2016-2016

Released	2021-03-10
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	PO4, UED

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7JT0 \| pdb_00007jt0	Download File View File

Crystal structure of SARS-CoV-2 3CL protease in complex with MAC5576

Iketani, S., Forouhar, F., Liu, H., Hong, S.J., Lin, F.-Y., Nair, M.S., Zask, A., Huang, Y., Xing, L., Stockwell, B.R., Chavez, A., Ho, D.D.

(2021) Nat Commun 12: 2016-2016

Released	2021-03-10
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	LW1, PO4

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7JT7 \| pdb_00007jt7	Download File View File

Crystal structure of SARS-CoV-2 3CL protease in complex with compound 4

Iketani, S., Forouhar, F., Liu, H., Hong, S.J., Lin, F.-Y., Nair, M.S., Zask, A., Huang, Y., Xing, L., Stockwell, B.R., Chavez, A., Ho, D.D.

(2021) Nat Commun 12: 2016-2016

Released	2021-03-17
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	TG3

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7JW8 \| pdb_00007jw8	Download File View File

Crystal structure of SARS-CoV-2 3CL protease in complex with compound 4 in space group P1

Iketani, S., Forouhar, F., Liu, H., Hong, S.J., Lin, F.-Y., Nair, M.S., Zask, A., Xing, L., Stockwell, B.R., Chavez, A., Ho, D.D.

(2021) Nat Commun 12: 2016-2016

Released	2021-03-10
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	BTB, TG3

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7JYC \| pdb_00007jyc	Download File View File

Crystal Structure of SARS-CoV-2 Main Protease (3CLpro/Mpro) in Complex with Covalent Inhibitor Narlaprevir

Andi, B., Kumaran, D., Kreitler, D.F., Soares, A.S., Shi, W., Jakoncic, J., Fuchs, M.R., Keereetaweep, J., Shanklin, J., McSweeney, S.

(2022) Sci Rep 12: 12197-12197

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DMS, NA, NNA

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7K6D \| pdb_00007k6d	Download File View File

SARS-CoV-2 Main Protease Co-Crystal Structure with Telaprevir Determined from Crystals Grown with 40 nL Acoustically Ejected Mpro Droplets at 1.48 A Resolution (Cryo-protected)

Kreitler, D.F., Andi, B., Kumaran, D., Soares, A.S., Shi, W., Jakoncic, J., Fuchs, M.R., Keereetaweep, J., Shanklin, J., McSweeney, S.

(2022) Sci Rep 12: 12197-12197

Released	2020-09-30
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DMS, SV6

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7K6E \| pdb_00007k6e	Download File View File

SARS-CoV-2 Main Protease Co-Crystal Structure with Telaprevir Determined from Crystals Grown with 40 nL Acoustically Ejected Mpro Droplets at 1.63 A Resolution (Direct Vitrification)

Kreitler, D.F., Andi, B., Kumaran, D., Soares, A.S., Shi, W., Jakoncic, J., Fuchs, M.R., Keereetaweep, J., Shanklin, J., McSweeney, S.

(2022) Sci Rep 12: 12197-12197

Released	2020-09-30
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DMS, SV6

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7LCO \| pdb_00007lco	Download File View File

Improved Feline Drugs as SARS-CoV-2 Mpro Inhibitors: Structure-Activity Studies & Micellar Solubilization for Enhanced Bioavailability

Khan, M.B., Lu, J., Arutyunova, E., Young, H.S., Lemieux, M.J.

(2021) Eur J Med Chem 222: 113584-113584

Released	2021-07-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	XTJ

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7LCP \| pdb_00007lcp	Download File View File

N-terminal finger stabilizes feline drug GC376 in coronavirus 3CL protease

Khan, M.B., Arutyunova, E., Young, H.S., Lemieux, M.J.

(2021) J Mol Biology 433: 167003-167003

Released	2021-05-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	CA, EDO, UED

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7LCQ \| pdb_00007lcq	Download File View File

N-terminal finger stabilizes feline drug GC376 in coronavirus 3CL protease

Khan, M.B., Arutyunova, E., Young, H.S., Lemieux, M.J.

(2021) J Mol Biology 433: 167003-167003

Released	2021-05-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	EDO, UED

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7LCR \| pdb_00007lcr	Download File View File

Improved Feline Drugs as SARS-CoV-2 Mpro Inhibitors: Structure-Activity Studies & Micellar Solubilization for Enhanced Bioavailability

Khan, M.B., Arutyunova, E., Young, H.S., Lemieux, M.J.

(2021) Eur J Med Chem 222: 113584-113584

Released	2022-12-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	XTM

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7LCS \| pdb_00007lcs	Download File View File

Improved Feline Drugs as SARS-CoV-2 Mpro Inhibitors: Structure-Activity Studies & Micellar Solubilization for Enhanced Bioavailability

Khan, M.B., Arutyunova, E., Young, H.S., Lemieux, M.J.

(2021) Eur J Med Chem 222: 113584-113584

Released	2021-07-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	XTP

1 to 25 of 167 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3SV6 | pdb_00003sv6

3SV7 | pdb_00003sv7

3SV8 | pdb_00003sv8

3SV9 | pdb_00003sv9

6XCH | pdb_00006xch

7JP0 | pdb_00007jp0

7JPZ | pdb_00007jpz

7JQ0 | pdb_00007jq0

7JQ1 | pdb_00007jq1

7JQ2 | pdb_00007jq2

7JQ3 | pdb_00007jq3

7JQ4 | pdb_00007jq4

7JQ5 | pdb_00007jq5

7JSU | pdb_00007jsu

7JT0 | pdb_00007jt0

7JT7 | pdb_00007jt7

7JW8 | pdb_00007jw8

7JYC | pdb_00007jyc

7K6D | pdb_00007k6d

7K6E | pdb_00007k6e

7LCO | pdb_00007lco

7LCP | pdb_00007lcp

7LCQ | pdb_00007lcq

7LCR | pdb_00007lcr

7LCS | pdb_00007lcs