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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Structure Keywords HAS EXACT PHRASE "replication, transferase/DNA"

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This query matches 65 Structures.

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2PY5	Download File View File

Phi29 DNA polymerase complexed with single-stranded DNA

Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2007) EMBO J 26: 3494-3505

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-d(GGACTTT)-3' (nucleic acid)
Unique Ligands	EDO

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2PYJ	Download File View File

Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex)

Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2007) EMBO J 26: 3494-3505

Released	2007-07-17
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-d(ACACGTAAGCAGTC)-3' (nucleic acid) 5'-d(GACTGCTTA(DOC)-3' (nucleic acid)
Unique Ligands	DGT, EDO, MG, MN

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2PYL	Download File View File

Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex)

Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2007) EMBO J 26: 3494-3505

Released	2007-07-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-d(CTGACGAATGTACA)-3' (nucleic acid) 5'-d(GACTGCTTAC(2DA))-3' (nucleic acid)
Unique Ligands	EDO, MG, TTP

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2PZS	Download File View File

Phi29 DNA polymerase complexed with primer-template DNA (post-translocation binary complex)

Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2007) EMBO J 26: 3494-3505

Released	2007-07-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-d(CTAACACGTAAGCAGTC)-3' (nucleic acid) 5'-d(GACTGCTTAC)-3' (nucleic acid)

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2R8G	Download File View File

Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase

Wang, Y., Saleh, S., Marnette, L.J., Egli, M., Stone, M.P.

(2008) Biochemistry 47: 7322-7334

Released	2008-07-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Macromolecule	DNA polymerase IV (protein) 5'-D(DGPDGPDGPDGPDGPDAPDAPDGPDGPDAPDTPDTPDT)-3' (nucleic acid) 5'-D(DTPDCPDAPDCP(P)PDGPDAPDAPDAPDTPDCPDCPDTPDTPDCPDCPDCPDCPDC)-3' (nucleic acid)
Unique Ligands	CA, DGT

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2R8H	Download File View File

Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase

Wang, Y., Saleh, S., Marnette, L.J., Egli, M., Stone, M.P.

(2008) Biochemistry 47: 7322-7334

Released	2008-07-22
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(DGPDGPDGPDGPDGPDAPDAPDGPDGPDAPDTPDTPDC)-3') (nucleic acid) DNA (5'-D(DTPDCPDAPDCP(P)PDGPDAPDAPDTPDCPDCPDTPDTPDCPDCPDCPDCP*DC)-3') (nucleic acid)
Unique Ligands	CA, DGT

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2R8I	Download File View File

Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase

Wang, Y., Saleh, S., Marnette, L.J., Egli, M., Stone, M.P.

(2008) Biochemistry 47: 7322-7334

Released	2008-07-22
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(DGPDGPDGPDGPDGPDAPDAPDGPDGPDAPDTPDTPDC)-3') (nucleic acid) DNA (5'-D(DTPDCPDAPDTP(P)PDGPDAPDAPDTPDCPDCPDTPDTPDCPDCPDCPDCP*DC)-3') (nucleic acid)
Unique Ligands	CA, DTP

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2R8J	Download File View File

Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA

Carell, T., Alt, A., Lammens, K.

(2007) Science 318: 967-970

Released	2007-12-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(DGPDTPDGPDGPDAPDTPDGPDAPDG)-3') (nucleic acid) DNA (5'-D(PDGPDGPDCPDTPDCPDAPDTPDCPDCPDAPDC)-3') (nucleic acid)
Unique Ligands	CA, CPT, DCP

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2R8K	Download File View File

Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA

Carell, T., Alt, A., Lammens, K.

(2007) Science 318: 967-970

Released	2007-12-11
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA polymerase eta (protein) 5'-D(DGPDTPDGPDGPDTPDGPDAPDGPDC)-3' (nucleic acid) 5'-D(PDGPDGPDCPDTPDCPDAPDCPDCPDAP*DC)-3' (nucleic acid)
Unique Ligands	CA, CPT, DTP

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5KFA	Download File View File

Human DNA polymerase eta-DNA ternary complex: ground state at pH7.0 (K+ MES) with 1 Ca2+ ion

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, DTP, GOL, K

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5KFB	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 1 mM Mn2+ for 90s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, DTP, GOL, MN

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5KFC	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 1 mM Mn2+ for 180s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, DTP, GOL, MN

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5KFD	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 1 mM Mn2+ for 300s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, DTP, GOL, MN

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5KFE	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 1 mM Mn2+ for 600s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, DTP, GOL, MN

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5KFF	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 1 mM Mn2+ for 1800s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	DTP, GOL, MN

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5KFG	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 30s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-29
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, DTP, EDO, GOL, MN

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5KFH	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 90s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPTPA)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCP*T)-3') (nucleic acid)
Unique Ligands	CA, DPO, DTP, GOL, MN

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5KFI	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 120s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPTPA)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCP*T)-3') (nucleic acid)
Unique Ligands	CA, DPO, DTP, GOL, MN

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5KFJ	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 180s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPTPA)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCP*T)-3') (nucleic acid)
Unique Ligands	CA, DPO, DTP, GOL, MN

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5KFK	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 300s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPTPA)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCP*T)-3') (nucleic acid)
Unique Ligands	CA, DPO, DTP, GOL, MN

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5KFL	Download File View File

Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 600s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPTPA)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCP*T)-3') (nucleic acid)
Unique Ligands	DPO, DTP, GOL, MN

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5KFM	Download File View File

Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: ground state at pH7.0 (K+ MES) with 1 Ca2+ ion

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, GOL, STP

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5KFN	Download File View File

Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: reaction with 1 mM Mg2+ for 1800s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, GOL, MG, STP

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5KFO	Download File View File

Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: reaction with 1 mM Mn2+ for 1800s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	CA, GOL, MN, STP

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5KFP	Download File View File

Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: reaction with 20 mM Mg2+ for 600s

Gao, Y., Yang, W.

(2016) Science 352: 1334-1337

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPTP(DS))-3') (nucleic acid) DNA (5'-D(CPAPTPTPAPTPGPAPCPGPCP*T)-3') (nucleic acid)
Unique Ligands	CA, DPO, GOL, MG, STP