PDB Statistics: PDB Data Distribution by Experimental Method and Molecular Type

PDB Data Distribution by Experimental Method and Molecular Type

Molecular Type	X-ray	EM	NMR	Multiple methods	Neutron	Other	Total
Protein (only)	167,775	15,928	12,540	208	79	32	196,562
Protein/Oligosaccharide	9,668	2,681	34	8	2	0	12,393
Protein/NA	8,757	4,781	286	7	0	0	13,831
Nucleic acid (only)	2,870	142	1,510	14	3	1	4,540
Other	170	10	33	0	0	0	213
Oligosaccharide (only)	11	0	6	1	0	4	22
Total	189,251	23,542	14,409	238	84	37	227,561

PDB Structures with Experimental Data

179,331 have a structure factor file
11,505 have an NMR restraint file
6,038 have a chemical shifts file
4,214 have NMR unified data files (NEF and/or NMR-STAR format files)
23,040 3DEM maps were used for the determination of 23,270 PDB structures

PDB Structures with Small Molecule Data

172,576 with any non-polymer small molecules
171,015 with non-polymer small molecules of 100-300 Da
59,573 with non-polymer small molecules of 300-500 Da
40,898 with non-polymer small molecules of 500-1200 Da
38,651 with author-designated Ligand/s of Interest
4,537 with a biologically interesting short oligomer or oligomer-like BIRD molecules
12,573 with with branched entities of oligosaccharides

Sunburst Chart for Experimental Method and Molecular Type

Inner most layer represents the distribution by experimental methods, X-ray is shown in blue; NMR in orange; EM in green; Multiple methods in yellow; Neutron in pink; Other in grey. Outer most layer further shows the distribution by molecular type of each correspond experimental method.

Mouse over to view the statistical description of the particular section; click on a section to zoom in that particular section's statistical distribution, and then click on the center bullseye to zoom out back to the previous distribution.

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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PDB Data Distribution by Experimental Method and Molecular Type

PDB Structures with Experimental Data

PDB Structures with Small Molecule Data

Sunburst Chart for Experimental Method and Molecular Type