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 22NC | pdb_000022nc

Cryo-EM structure of Orb2 amyloid from 30-day-old Drosophila (4Hc)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.78 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 22NC

This is version 1.0 of the entry. See complete history. 

Literature

Age-dependent structural evolution of a functional amyloid contributes to memory impairment in Drosophila.

Ou, S., Guillen-Poza, P.A., Ng, K.K., Xu, L., Cheng, B.Y., Yi, Y., Ho, L.Y., Franco-Fernandez, A., Khaki, P.S.S., Mukhi, M., Cheung, K.C., Sharma, R., Oroz, J., Hirano, Y., Hervas, R.

(2026) Cell 

  • DOI: https://doi.org/10.1016/j.cell.2026.10.009
  • Primary Citation Related Structures: 
    21BU, 21BV, 21BW, 21BX, 21BY, 22NC

  • PubMed Abstract: 

    Cryogenic electron microscopy has revealed endpoint structures of ex vivo amyloid filaments, but how amyloids assemble and evolve in living organisms-and how these transitions affect physiology-remains poorly understood. Here, we map the age-dependent structural landscape of Orb2 amyloid, a synaptic translation regulator required for long-term memory, across the adult lifespan of Drosophila melanogaster. By determining multiple Orb2 amyloid structures, we uncover a dynamic, age-linked progression of amyloid states. Translation-promoting assemblies predominate early in life, whereas aging shifts the Orb2 amyloid ensemble toward structurally distinct, destabilization-resistant assemblies with reduced translational activity, coinciding with memory impairment. Manipulating memory-related chaperones in the brain shifts Orb2 toward youthful, translation-promoting states and improves memory in old flies; conversely, shifting Orb2 toward aged-like, translation-deficient states in young adults is associated with premature memory impairment. These findings define an in vivo trajectory of amyloid evolution and link amyloid structural dynamics to synaptic translation and memory.


  • Organizational Affiliation: 
    • School of Biomedical Sciences, The University of Hong Kong, Hong Kong, HKSAR, China.

Macromolecule Content 

  • Total Structure Weight: 119.23 kDa 
  • Atom Count: 8,090 
  • Modeled Residue Count: 890 
  • Deposited Residue Count: 930 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Translational regulator orb231Drosophila melanogasterMutation(s): 0 
Gene Names: orb2
UniProt
Find proteins for Q9VSR3 (Drosophila melanogaster)
Explore Q9VSR3 
Go to UniProtKB:  Q9VSR3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VSR3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.78 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION5.0

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not fundedHong Kong--

Revision History  (Full details and data files)

  • Version 1.0: 2026-11-11
    Type: Initial release