2E7P

Crystal structure of the holo form of glutaredoxin C1 from populus tremula x tremuloides


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 

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This is version 1.3 of the entry. See complete history


Literature

Functional, structural, and spectroscopic characterization of a glutathione-ligated [2Fe-2S] cluster in poplar glutaredoxin C1

Rouhier, N.Unno, H.Bandyopadhyay, S.Masip, L.Kim, S.K.Hirasawa, M.Gualberto, J.M.Lattard, V.Kusunoki, M.Knaff, D.B.Georgiou, G.Hase, T.Johnson, M.K.Jacquot, J.P.

(2007) Proc Natl Acad Sci U S A 104: 7379-7384

  • DOI: https://doi.org/10.1073/pnas.0702268104
  • Primary Citation of Related Structures:  
    2E7P

  • PubMed Abstract: 

    When expressed in Escherichia coli, cytosolic poplar glutaredoxin C1 (CGYC active site) exists as a dimeric iron-sulfur-containing holoprotein or as a monomeric apoprotein in solution. Analytical and spectroscopic studies of wild-type protein and site-directed variants and structural characterization of the holoprotein by using x-ray crystallography indicate that the holoprotein contains a subunit-bridging [2Fe-2S] cluster that is ligated by the catalytic cysteines of two glutaredoxins and the cysteines of two glutathiones. Mutagenesis data on a variety of poplar glutaredoxins suggest that the incorporation of an iron-sulfur cluster could be a general feature of plant glutaredoxins possessing a glycine adjacent to the catalytic cysteine. In light of these results, the possible involvement of plant glutaredoxins in oxidative stress sensing or iron-sulfur biosynthesis is discussed with respect to their intracellular localization.


  • Organizational Affiliation

    Unité Mixte de Recherche 1136, Institut National de la Recherche Agronomique, Institut Fédératif de Recherche 110, Genomics, Ecology, Nancy University, BP 239, 54506 Vandoeuvre-lès-Nancy Cedex, France. nrouhier@scbiol.uhp-nancy.fr


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutaredoxin
A, B, C, D
116Populus tremula x Populus tremuloidesMutation(s): 0 
UniProt
Find proteins for Q5PSJ1 (Populus tremula x Populus tremuloides)
Explore Q5PSJ1 
Go to UniProtKB:  Q5PSJ1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5PSJ1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.774α = 90
b = 97.774β = 90
c = 91.51γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
SHARPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-09-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.2: 2011-12-07
    Changes: Non-polymer description
  • Version 1.3: 2024-03-13
    Changes: Data collection, Database references, Derived calculations