2P52 | pdb_00002p52

mouse p53 DNA-binding domain in zinc-free oxidized state

PDB DOI: https://doi.org/10.2210/pdb2P52/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Mus musculus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-03-14 Released: 2008-01-29
Deposition Author(s): Kwon, E., Kim, D.Y., Suh, S.W., Kim, K.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.236 (Depositor), 0.236 (DCC)
R-Value Work:
0.211 (Depositor), 0.211 (DCC)
R-Value Observed:
0.211 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2P52

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the mouse p53 core domain in zinc-free state.

Kwon, E., Kim, D.Y., Suh, S.W., Kim, K.K.

(2008) Proteins 70: 280-283

PubMed: 17876829 Search on PubMed
DOI: https://doi.org/10.1002/prot.21608
Primary Citation Related Structures:
2P52

Organizational Affiliation

Department of Molecular Cell Biology, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon 440-746, Korea.

Macromolecule Content

Total Structure Weight: 22.21 kDa
Atom Count: 1,874
Modeled Residue Count: 196
Deposited Residue Count: 196
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cellular tumor antigen p53	A	196	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P02340 (Mus musculus) Explore P02340 Go to UniProtKB: P02340
IMPC: MGI:98834
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02340
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.236 (Depositor), 0.236 (DCC)
R-Value Work: 0.211 (Depositor), 0.211 (DCC)
R-Value Observed: 0.211 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.235	α = 90
b = 59.939	β = 90
c = 70.462	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
EPMR	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-01-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-01-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-10-25
Changes: Data collection, Database references, Refinement description
Version 1.3: 2024-10-09
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.