Download MendeleyStructure and mechanism of a cofactor f0 accelerated (6-4) photolyase from the fruit fly
Maul, M.J., Barends, T., Glas, A.F., Cryle, M.J., Schneider, S., Domratcheva, T., Schlichting, I., Carell, T.To be published.
3CVW
Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0
- PDB DOI: https://doi.org/10.2210/pdb3CVW/pdb
- NAKB: 3CVW
- Classification: Lyase/DNA
- Organism(s): Drosophila melanogaster
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2008-04-20 Released: 2009-10-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.329
- R-Value Work: 0.272
- R-Value Observed: 0.275
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RE11660p | C [auth A] | 543 | Drosophila melanogaster | Mutation(s): 1 Gene Names: phr64-520 |  |
UniProt | |||||
Find proteins for Q8SXK5 (Drosophila melanogaster) Explore Q8SXK5 Go to UniProtKB: Q8SXK5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8SXK5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3') | A [auth C] | 15 | N/A |  | |
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | B [auth D] | 15 | N/A |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | D [auth A] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | ||
| FO1 Query on FO1 | E [auth A] | 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol C16 H17 N3 O7 AUEILLWDYUBWCM-XQQFMLRXSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.329
- R-Value Work: 0.272
- R-Value Observed: 0.275
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.47 | α = 90 |
| b = 89.51 | β = 90 |
| c = 89.34 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MAR345 | data collection |
| XDS | data reduction |
| XSCALE | data scaling |
| REFMAC | phasing |
Entry History
Deposition Data
- Released Date: 2009-10-13 Deposition Author(s): Maul, M.J., Barends, T.R.M., Glas, A.F., Cryle, M.J., Schlichting, I., Carell, T.
Revision History (Full details and data files)
- Version 1.0: 2009-10-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2021-10-20
Changes: Database references, Derived calculations - Version 1.4: 2024-02-21
Changes: Data collection
