Crystal Structure of Calcineurin-like Phosphoesterase from Bacillus subtilis
Kim, Y., Marshall, N., Cobb, G., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
YfkN protein | 341 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0  Gene Names: BSU07840, yfkN EC: 3.1.3.6 (UniProt), 3.1.3.5 (UniProt), 3.1.4.16 (UniProt) | ||
UniProt | |||||
Find proteins for O34313 (Bacillus subtilis (strain 168)) Explore O34313  Go to UniProtKB:  O34313 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O34313 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CIT Query on CIT | E [auth A], I [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N | |||
MN Query on MN | C [auth A], F [auth B] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
MG Query on MG | D [auth A], G [auth B], H [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 67.091 | α = 90 |
b = 92.505 | β = 89.94 |
c = 50.316 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | data collection |
HKL-3000 | phasing |
SHELXCD | phasing |
SHELXD | phasing |
MLPHARE | phasing |
DM | model building |
SOLVE | phasing |
RESOLVE | model building |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
DM | phasing |
RESOLVE | phasing |