3OMZ

Crystal structure of MICA-specific human gamma delta T cell receptor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.04 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.265 
  • R-Value Observed: 0.267 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of a {gamma}{delta} T-cell receptor specific for the human MHC class I homolog MICA.

Xu, B.Pizarro, J.C.Holmes, M.A.McBeth, C.Groh, V.Spies, T.Strong, R.K.

(2011) Proc Natl Acad Sci U S A 108: 2414-2419

  • DOI: https://doi.org/10.1073/pnas.1015433108
  • Primary Citation of Related Structures:  
    3OMZ

  • PubMed Abstract: 

    γδ T cells play important roles in bridging innate and adaptive immunity, but their recognition mechanisms remain poorly understood. Human γδ T cells of the V(δ)1 subset predominate in intestinal epithelia and respond to MICA and MICB (MHC class I chain-related, A and B; MIC) self-antigens, mediating responses to tumorigenesis or viral infection. The crystal structure of an MIC-reactive V(δ)1 γδ T-cell receptor (TCR) showed expected overall structural homology to antibodies, αβ, and other γδ TCRs, but complementary determining region conformations and conservation of V(δ)1 use revealed an uncharacteristically flat potential binding surface. MIC, likewise, serves as a ligand for the activating immunoreceptor natural killer group 2, D (NKG2D), also expressed on γδ T cells. Although MIC recognition drives both the TCR-dependent stimulatory and NKG2D-dependent costimulatory signals necessary for activation, interaction analyses showed that MIC binding by the two receptors was mutually exclusive. Analysis of relative binding kinetics suggested sequential recognition, defining constraints for the temporal organization of γδ T-cell/target cell interfaces.


  • Organizational Affiliation

    Division of Basic Sciences and Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
human Vdelta1 gamma delta T cell receptor delta1A/B-3A,
B [auth C],
C [auth E],
D [auth G]
259Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.04 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.265 
  • R-Value Observed: 0.267 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 112.37α = 90
b = 112.37β = 90
c = 108.11γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
SHELXSphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-01-26
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2024-10-09
    Changes: Data collection, Database references, Structure summary