3VKA

Crystal structure of MoeO5 soaked for 3 hours in FsPP

PDB DOI: https://doi.org/10.2210/pdb3VKA/pdb

Classification: TRANSFERASE
Organism(s): Streptomyces viridosporus ATCC 14672
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-11-11 Released: 2012-05-09
Deposition Author(s): Ren, F., Ko, T.-P., Huang, C.-H., Guo, R.-T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.57 Å
R-Value Free: 0.191
R-Value Work: 0.163
R-Value Observed: 0.165

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

Insights into the mechanism of the antibiotic-synthesizing enzyme MoeO5 from crystal structures of different complexes

Ren, F., Ko, T.-P., Feng, X., Huang, C.-H., Chan, H.-C., Hu, Y., Wang, K., Ma, Y., Liang, P.-H., Wang, A.H.-J., Oldfield, E., Guo, R.-T.

(2012) Angew Chem Int Ed Engl 51: 4157-4160

PubMed: 22431288 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1002/anie.201108002
Primary Citation of Related Structures:
3VK5, 3VKA, 3VKB, 3VKC, 3VKD

Organizational Affiliation

Industrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China.

Macromolecule Content

Total Structure Weight: 63 kDa
Atom Count: 4,447
Modelled Residue Count: 505
Deposited Residue Count: 572
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MoeO5	A, B	286	Streptomyces viridosporus ATCC 14672	Mutation(s): 0 Gene Names: moeO5
UniProt
Find proteins for A0A011 (Streptomyces viridosporus) Explore A0A011 Go to UniProtKB: A0A011
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A011
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FPQ Query on FPQ Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth B] mmCIF format, chain D [auth A] mmCIF format, chain E [auth B]	D [auth A], E [auth B]	(2R)-3-(phosphonooxy)-2-{[(2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]oxy}propanoic acid C₁₈ H₃₁ O₇ P SLQQIKXGDCLCGX-XLGHFPRDSA-N		Interactions Focus chain D [auth A] Focus chain E [auth B] Interactions & Density Focus chain D [auth A] Focus chain E [auth B]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.57 Å
R-Value Free: 0.191
R-Value Work: 0.163
R-Value Observed: 0.165
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.598	α = 97.62
b = 58.932	β = 108.44
c = 58.765	γ = 112.52

Software Package:

Software Name	Purpose
Blu-Ice	data collection
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2012-05-09

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-05-09
Type: Initial release
Version 1.1: 2015-04-29
Changes: Database references
Version 1.2: 2017-11-22
Changes: Refinement description
Version 1.3: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description