4DYT | pdb_00004dyt

Crystal Structure of WSN/A Influenza Nucleoprotein with Three Mutations (E53D, Y289H, Y313V)

PDB DOI: https://doi.org/10.2210/pdb4DYT/pdb

Classification: VIRAL PROTEIN
Organism(s): Influenza A virus (A/WSN/1933(H1N1))
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2012-02-29 Released: 2013-03-06
Deposition Author(s): Lewis, H.A., Baldwin, E.T., Steinbacher, S., Maskos, K., Mortl, M., Kiefersauer, R., Edavettal, S., McDonnell, P.A., Pearce, B.C., Langley, D.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free:
0.342 (Depositor), 0.362 (DCC)
R-Value Work:
0.270 (Depositor), 0.266 (DCC)
R-Value Observed:
0.272 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

To be determined

Lewis, H.A., Baldwin, E.T., Steinbacher, S., Maskos, K., Mortl, M., Kiefersauer, R., Edavettal, S., McDonnell, P.A., Pearce, B.C., Langley, D.R.

To be published.

Macromolecule Content

Total Structure Weight: 170.5 kDa
Atom Count: 8,534
Modeled Residue Count: 1,294
Deposited Residue Count: 1,500
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleocapsid protein	A, B, C	500	Influenza A virus (A/WSN/1933(H1N1))	Mutation(s): 3 Gene Names: NP
UniProt
Find proteins for Q1K9H2 (Influenza A virus (strain A/Wilson-Smith/1933 H1N1)) Explore Q1K9H2 Go to UniProtKB: Q1K9H2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1K9H2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.342 (Depositor), 0.362 (DCC)
R-Value Work: 0.270 (Depositor), 0.266 (DCC)
R-Value Observed: 0.272 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.46	α = 90
b = 135.93	β = 90
c = 191.17	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-03-06

Deposition Author(s):

Steinbacher, S.

Kiefersauer, R.

McDonnell, P.A.

Revision History (Full details and data files)

Version 1.0: 2013-03-06
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.