New Delhi Metallo-beta-Lactamase-1, Complexed with Cd and Faropenem
Kim, Y., Tesar, C., Jedrzejczak, R., Babnigg, J., Mire, J., Sacchettini, J., Joachimiak, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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A newer entry is available that reflects an alternative modeling of the original data: 6EX7
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-lactamase NDM-1 | 243 | Klebsiella pneumoniae | Mutation(s): 0  Gene Names: blaNDM-1 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for C7C422 (Klebsiella pneumoniae) Explore C7C422  Go to UniProtKB:  C7C422 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C7C422 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SFR Query on SFR | D [auth A], J [auth B] | (2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid C12 H17 N O6 S CGJDLFMMMJEANA-DAGMQNCNSA-N | |||
FPM Query on FPM | C [auth A], K [auth B] | (5R,6S)-6-(1-hydroxyethyl)-7-oxo-3-[(2R)-oxolan-2-yl]-4-thia-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid C12 H15 N O5 S HGGAKXAHAYOLDJ-FHZUQPTBSA-N | |||
CD Query on CD | E [auth A] F [auth A] G [auth A] N [auth B] O [auth B] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N | |||
GOL Query on GOL | L [auth B], M [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | H [auth A], I [auth A], Q [auth B], R [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 145.627 | α = 90 |
b = 39.324 | β = 99.96 |
c = 75.37 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | data collection |
HKL-3000 | phasing |
MOLREP | phasing |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |