4V7X

Structure of the Thermus thermophilus ribosome complexed with erythromycin.

• PDB DOI: https://doi.org/10.2210/pdb4V7X/pdb
• Entry: 4V7X supersedes: 3OHC, 3OHD, 3OHJ, 3OHK
• NAKB: 4V7X

• Classification: RIBOSOME/ANTIBIOTIC
• Organism(s): Thermus thermophilus HB8
• Mutation(s): No 


• Deposited: 2010-08-17 Released: 2014-07-09 
• Deposition Author(s): Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.278 
• R-Value Work: 0.243 

Literature

Revisiting the structures of several antibiotics bound to the bacterial ribosome.

Bulkley, D., Innis, C.A., Blaha, G., Steitz, T.A.

(2010) Proc Natl Acad Sci U S A 107: 17158-17163

• PubMed: 20876130 
• DOI: https://doi.org/10.1073/pnas.1008685107
• Primary Citation of Related Structures:  
  4V7W, 4V7X, 4V7Y, 4V7Z


• PubMed Abstract: 
  

  The increasing prevalence of antibiotic-resistant pathogens reinforces the need for structures of antibiotic-ribosome complexes that are accurate enough to enable the rational design of novel ribosome-targeting therapeutics. Structures of many antibiotics in complex with both archaeal and eubacterial ribosomes have been determined, yet discrepancies between several of these models have raised the question of whether these differences arise from species-specific variations or from experimental problems. Our structure of chloramphenicol in complex with the 70S ribosome from Thermus thermophilus suggests a model for chloramphenicol bound to the large subunit of the bacterial ribosome that is radically different from the prevailing model. Further, our structures of the macrolide antibiotics erythromycin and azithromycin in complex with a bacterial ribosome are indistinguishable from those determined of complexes with the 50S subunit of Haloarcula marismortui, but differ significantly from the models that have been published for 50S subunit complexes of the eubacterium Deinococcus radiodurans. Our structure of the antibiotic telithromycin bound to the T. thermophilus ribosome reveals a lactone ring with a conformation similar to that observed in the H. marismortui and D. radiodurans complexes. However, the alkyl-aryl moiety is oriented differently in all three organisms, and the contacts observed with the T. thermophilus ribosome are consistent with biochemical studies performed on the Escherichia coli ribosome. Thus, our results support a mode of macrolide binding that is largely conserved across species, suggesting that the quality and interpretation of electron density, rather than species specificity, may be responsible for many of the discrepancies between the models.

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Organizational Affiliation: 

Departments of Chemistry, Yale University, Howard Hughes Medical Institute, New Haven, CT 06511, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 48-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 48-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 48-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 48-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 4,267.87 kDa 
• Atom Count: 278,034 
• Modelled Residue Count: 20,064 
• Deposited Residue Count: 20,918 
• Unique protein chains: 48
• Unique nucleic acid chains: 3

Macromolecules

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S2	AB [auth CB], B [auth AB]	256	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80371 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80371  Go to UniProtKB:  P80371

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S3	BB [auth CC], C [auth AC]	239	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80372 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80372  Go to UniProtKB:  P80372

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S4	CB [auth CD], D [auth AD]	209	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80373 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80373  Go to UniProtKB:  P80373

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S5	DB [auth CE], E [auth AE]	160	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ5  Go to UniProtKB:  Q5SHQ5

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S6	EB [auth CF], F [auth AF]	101	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SLP8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLP8  Go to UniProtKB:  Q5SLP8

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S7	FB [auth CG], G [auth AG]	156	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P17291 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P17291  Go to UniProtKB:  P17291

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S8	GB [auth CH], H [auth AH]	138	Thermus thermophilus HB8	Mutation(s): 0

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S9	HB [auth CI], I [auth AI]	128	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80374 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80374  Go to UniProtKB:  P80374

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S10	IB [auth CJ], J [auth AJ]	105	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHN7 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHN7  Go to UniProtKB:  Q5SHN7

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S11	JB [auth CK], K [auth AK]	129	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80376 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80376  Go to UniProtKB:  P80376

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S12	KB [auth CL], L [auth AL]	135	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHN3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHN3  Go to UniProtKB:  Q5SHN3

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S13	LB [auth CM], M [auth AM]	126	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80377 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80377  Go to UniProtKB:  P80377

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S14	MB [auth CN], N [auth AN]	61	Thermus thermophilus HB8	Mutation(s): 0

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S15	NB [auth CO], O [auth AO]	89	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SJ76 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJ76  Go to UniProtKB:  Q5SJ76

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S16	OB [auth CP], P [auth AP]	88	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SJH3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJH3  Go to UniProtKB:  Q5SJH3

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S17	PB [auth CQ], Q [auth AQ]	105	Thermus thermophilus HB8	Mutation(s): 0

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S18	QB [auth CR], R [auth AR]	88	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SLQ0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLQ0  Go to UniProtKB:  Q5SLQ0

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S19	RB [auth CS], S [auth AS]	93	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP2 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP2  Go to UniProtKB:  Q5SHP2

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S20	SB [auth CT], T [auth AT]	106	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80380 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80380  Go to UniProtKB:  P80380

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein Thx	TB [auth CU], U [auth AU]	27	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SIH3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SIH3  Go to UniProtKB:  Q5SIH3

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L27	UB [auth D0], V [auth B0]	85	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60493 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60493  Go to UniProtKB:  P60493

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L28	VB [auth D1], W [auth B1]	98	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60494 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60494  Go to UniProtKB:  P60494

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L29	WB [auth D2], X [auth B2]	72	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP6  Go to UniProtKB:  Q5SHP6

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L30	XB [auth D3], Y [auth B3]	60	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ6  Go to UniProtKB:  Q5SHQ6

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L31	YB [auth D4], Z [auth B4]	71	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SJE1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJE1  Go to UniProtKB:  Q5SJE1

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L32	AA [auth B5], ZB [auth D5]	60	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80339 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80339  Go to UniProtKB:  P80339

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L33	AC [auth D6], BA [auth B6]	54	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P35871 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P35871  Go to UniProtKB:  P35871

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L34	BC [auth D7], CA [auth B7]	49	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80340 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80340  Go to UniProtKB:  P80340

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L35	CC [auth D8], DA [auth B8]	65	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SKU1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SKU1  Go to UniProtKB:  Q5SKU1

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L2	FC [auth DD], GA [auth BD]	276	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60405 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60405  Go to UniProtKB:  P60405

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L3	GC [auth DE], HA [auth BE]	206	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHN8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHN8  Go to UniProtKB:  Q5SHN8

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L4	HC [auth DF], IA [auth BF]	210	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHN9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHN9  Go to UniProtKB:  Q5SHN9

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L5	IC [auth DG], JA [auth BG]	182	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ0  Go to UniProtKB:  Q5SHQ0

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L6	JC [auth DH], KA [auth BH]	180	Thermus thermophilus HB8	Mutation(s): 0

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L9	KC [auth DI], LA [auth BI]	148	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SLQ1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLQ1  Go to UniProtKB:  Q5SLQ1

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L13	LC [auth DN], MA [auth BN]	140	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60488 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60488  Go to UniProtKB:  P60488

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L14	MC [auth DO], NA [auth BO]	122	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP8  Go to UniProtKB:  Q5SHP8

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L15	NC [auth DP], OA [auth BP]	150	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ7 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ7  Go to UniProtKB:  Q5SHQ7

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L16	OC [auth DQ], PA [auth BQ]	141	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60489 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60489  Go to UniProtKB:  P60489

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L17	PC [auth DR], QA [auth BR]	118	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q9Z9H5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q9Z9H5  Go to UniProtKB:  Q9Z9H5

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L18	QC [auth DS], RA [auth BS]	112	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ4 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ4  Go to UniProtKB:  Q5SHQ4

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L19	RC [auth DT], SA [auth BT]	146	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60490 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60490  Go to UniProtKB:  P60490

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L20	SC [auth DU], TA [auth BU]	118	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60491 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60491  Go to UniProtKB:  P60491

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L21	TC [auth DV], UA [auth BV]	101	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60492 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60492  Go to UniProtKB:  P60492

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L22	UC [auth DW], VA [auth BW]	113	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP3  Go to UniProtKB:  Q5SHP3

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L23	VC [auth DX], WA [auth BX]	96	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP0  Go to UniProtKB:  Q5SHP0

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L24	WC [auth DY], XA [auth BY]	110	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP9  Go to UniProtKB:  Q5SHP9

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L25	XC [auth DZ], YA [auth BZ]	206	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHZ1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHZ1  Go to UniProtKB:  Q5SHZ1

Entity ID: 1
Molecule	Chains	Length	Organism	Image
16S rRNA	A [auth AA], ZA [auth CA]	1,522	Thermus thermophilus HB8

Entity ID: 31
Molecule	Chains	Length	Organism	Image
23S ribosomal RNA	DC [auth DA], EA [auth BA]	2,787	Thermus thermophilus HB8

Entity ID: 32
Molecule	Chains	Length	Organism	Image
5S ribosomal RNA	EC [auth DB], FA [auth BB]	122	Thermus thermophilus HB8

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ERY	FT [auth BA], TIA [auth DA]	ERYTHROMYCIN A C37 H67 N O13 ULGZDMOVFRHVEP-RWJQBGPGSA-N
ZN	AF [auth AD], BF [auth AN], WV [auth CD], XV [auth CN]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
K	ET [auth BA], SIA [auth DA]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG	AAA [auth DA], ABA [auth DA], ACA [auth DA], AD [auth AA], ADA [auth DA], AE [auth AA], AEA [auth DA], AFA [auth DA], AG [auth BA], AGA [auth DA], AH [auth BA], AHA [auth DA], AI [auth BA], AIA [auth DA], AJ [auth BA], AJA [auth DQ], AK [auth BA], AL [auth BA], AM [auth BA], AN [auth BA], AO [auth BA], AP [auth BA], AQ [auth BA], AR [auth BA], AS [auth BA], AT [auth BA], AU [auth CA], AV [auth CA], AW [auth D5], AX [auth DA], AY [auth DA], AZ [auth DA], BAA [auth DA], BBA [auth DA], BCA [auth DA], BD [auth AA], BDA [auth DA], BE [auth AA], BEA [auth DA], BFA [auth DA], BG [auth BA], BGA [auth DA], BH [auth BA], BHA [auth DA], BI [auth BA], BIA [auth DA], BJ [auth BA], BJA [auth DR], BK [auth BA], BL [auth BA], BM [auth BA], BN [auth BA], BO [auth BA], BP [auth BA], BQ [auth BA], BR [auth BA], BS [auth BA], BT [auth BA], BU [auth CA], BV [auth CA], BW [auth D7], BX [auth DA], BY [auth DA], BZ [auth DA], CAA [auth DA], CBA [auth DA], CCA [auth DA], CD [auth AA], CDA [auth DA], CE [auth AA], CEA [auth DA], CF [auth B0], CFA [auth DA], CG [auth BA], CGA [auth DA], CH [auth BA], CHA [auth DA], CI [auth BA], CIA [auth DA], CJ [auth BA], CJA [auth DU], CK [auth BA], CL [auth BA], CM [auth BA], CN [auth BA], CO [auth BA], CP [auth BA], CQ [auth BA], CR [auth BA], CS [auth BA], CT [auth BA], CU [auth CA], CV [auth CA], CW [auth DA], CX [auth DA], CY [auth DA], CZ [auth DA], DAA [auth DA], DBA [auth DA], DCA [auth DA], DD [auth AA], DDA [auth DA], DE [auth AA], DEA [auth DA], DF [auth B1], DFA [auth DA], DG [auth BA], DGA [auth DA], DH [auth BA], DHA [auth DA], DI [auth BA], DIA [auth DA], DJ [auth BA], DJA [auth DX], DK [auth BA], DL [auth BA], DM [auth BA], DN [auth BA], DO [auth BA], DP [auth BA], DQ [auth BA], DR [auth BA], DS [auth BA], DT [auth BA], DU [auth CA], DV [auth CA], DW [auth DA], DX [auth DA], DY [auth DA], DZ [auth DA], EAA [auth DA], EBA [auth DA], ECA [auth DA], ED [auth AA], EDA [auth DA], EE [auth AA], EEA [auth DA], EF [auth B5], EFA [auth DA], EG [auth BA], EGA [auth DA], EH [auth BA], EHA [auth DA], EI [auth BA], EIA [auth DA], EJ [auth BA], EK [auth BA], EL [auth BA], EM [auth BA], EN [auth BA], EO [auth BA], EP [auth BA], EQ [auth BA], ER [auth BA], ES [auth BA], EU [auth CA], EV [auth CA], EW [auth DA], EX [auth DA], EY [auth DA], EZ [auth DA], FAA [auth DA], FBA [auth DA], FCA [auth DA], FD [auth AA], FDA [auth DA], FE [auth AA], FEA [auth DA], FF [auth B5], FFA [auth DA], FG [auth BA], FGA [auth DA], FH [auth BA], FHA [auth DA], FI [auth BA], FIA [auth DA], FJ [auth BA], FK [auth BA], FL [auth BA], FM [auth BA], FN [auth BA], FO [auth BA], FP [auth BA], FQ [auth BA], FR [auth BA], FS [auth BA], FU [auth CA], FV [auth CA], FW [auth DA], FX [auth DA], FY [auth DA], FZ [auth DA], GAA [auth DA], GBA [auth DA], GCA [auth DA], GD [auth AA], GDA [auth DA], GE [auth AA], GEA [auth DA], GF [auth BA], GFA [auth DA], GG [auth BA], GGA [auth DA], GH [auth BA], GHA [auth DA], GI [auth BA], GIA [auth DA], GJ [auth BA], GK [auth BA], GL [auth BA], GM [auth BA], GN [auth BA], GO [auth BA], GP [auth BA], GQ [auth BA], GR [auth BA], GS [auth BA], GT [auth BB], GU [auth CA], GV [auth CA], GW [auth DA], GX [auth DA], GY [auth DA], GZ [auth DA], HAA [auth DA], HBA [auth DA], HCA [auth DA], HD [auth AA], HDA [auth DA], HE [auth AA], HEA [auth DA], HF [auth BA], HFA [auth DA], HG [auth BA], HGA [auth DA], HH [auth BA], HHA [auth DA], HI [auth BA], HIA [auth DA], HJ [auth BA], HK [auth BA], HL [auth BA], HM [auth BA], HN [auth BA], HO [auth BA], HP [auth BA], HQ [auth BA], HR [auth BA], HS [auth BA], HT [auth BB], HU [auth CA], HV [auth CA], HW [auth DA], HX [auth DA], HY [auth DA], HZ [auth DA], IAA [auth DA], IBA [auth DA], ICA [auth DA], ID [auth AA], IDA [auth DA], IE [auth AA], IEA [auth DA], IF [auth BA], IFA [auth DA], IG [auth BA], IGA [auth DA], IH [auth BA], IHA [auth DA], II [auth BA], IIA [auth DA], IJ [auth BA], IK [auth BA], IL [auth BA], IM [auth BA], IN [auth BA], IO [auth BA], IP [auth BA], IQ [auth BA], IR [auth BA], IS [auth BA], IT [auth BB], IU [auth CA], IV [auth CA], IW [auth DA], IX [auth DA], IY [auth DA], IZ [auth DA], JAA [auth DA], JBA [auth DA], JCA [auth DA], JD [auth AA], JDA [auth DA], JE [auth AA], JEA [auth DA], JF [auth BA], JFA [auth DA], JG [auth BA], JGA [auth DA], JH [auth BA], JHA [auth DA], JI [auth BA], JIA [auth DA], JJ [auth BA], JK [auth BA], JL [auth BA], JM [auth BA], JN [auth BA], JO [auth BA], JP [auth BA], JQ [auth BA], JR [auth BA], JS [auth BA], JT [auth BB], JU [auth CA], JV [auth CA], JW [auth DA], JX [auth DA], JY [auth DA], JZ [auth DA], KAA [auth DA], KBA [auth DA], KCA [auth DA], KD [auth AA], KDA [auth DA], KE [auth AA], KEA [auth DA], KF [auth BA], KFA [auth DA], KG [auth BA], KGA [auth DA], KH [auth BA], KHA [auth DA], KI [auth BA], KIA [auth DA], KJ [auth BA], KK [auth BA], KL [auth BA], KM [auth BA], KN [auth BA], KO [auth BA], KP [auth BA], KQ [auth BA], KR [auth BA], KS [auth BA], KT [auth BB], KU [auth CA], KV [auth CA], KW [auth DA], KX [auth DA], KY [auth DA], KZ [auth DA], LAA [auth DA], LBA [auth DA], LCA [auth DA], LD [auth AA], LDA [auth DA], LE [auth AA], LEA [auth DA], LF [auth BA], LFA [auth DA], LG [auth BA], LGA [auth DA], LH [auth BA], LHA [auth DA], LI [auth BA], LIA [auth DA], LJ [auth BA], LK [auth BA], LL [auth BA], LM [auth BA], LN [auth BA], LO [auth BA], LP [auth BA], LQ [auth BA], LR [auth BA], LS [auth BA], LT [auth BB], LU [auth CA], LV [auth CA], LW [auth DA], LX [auth DA], LY [auth DA], LZ [auth DA], MAA [auth DA], MBA [auth DA], MCA [auth DA], MD [auth AA], MDA [auth DA], ME [auth AA], MEA [auth DA], MF [auth BA], MFA [auth DA], MG [auth BA], MGA [auth DA], MH [auth BA], MHA [auth DA], MI [auth BA], MIA [auth DA], MJ [auth BA], MK [auth BA], ML [auth BA], MM [auth BA], MN [auth BA], MO [auth BA], MP [auth BA], MQ [auth BA], MR [auth BA], MS [auth BA], MT [auth BB], MU [auth CA], MV [auth CA], MW [auth DA], MX [auth DA], MY [auth DA], MZ [auth DA], NAA [auth DA], NBA [auth DA], NCA [auth DA], ND [auth AA], NDA [auth DA], NE [auth AA], NEA [auth DA], NF [auth BA], NFA [auth DA], NG [auth BA], NGA [auth DA], NH [auth BA], NHA [auth DA], NI [auth BA], NIA [auth DA], NJ [auth BA], NK [auth BA], NL [auth BA], NM [auth BA], NN [auth BA], NO [auth BA], NP [auth BA], NQ [auth BA], NR [auth BA], NS [auth BA], NT [auth BD], NU [auth CA], NV [auth CA], NW [auth DA], NX [auth DA], NY [auth DA], NZ [auth DA], OAA [auth DA], OBA [auth DA], OCA [auth DA], OD [auth AA], ODA [auth DA], OE [auth AA], OEA [auth DA], OF [auth BA], OFA [auth DA], OG [auth BA], OGA [auth DA], OH [auth BA], OHA [auth DA], OI [auth BA], OIA [auth DA], OJ [auth BA], OK [auth BA], OL [auth BA], OM [auth BA], ON [auth BA], OO [auth BA], OP [auth BA], OQ [auth BA], OR [auth BA], OS [auth BA], OT [auth BE], OU [auth CA], OV [auth CA], OW [auth DA], OX [auth DA], OY [auth DA], OZ [auth DA], PAA [auth DA], PBA [auth DA], PCA [auth DA], PD [auth AA], PDA [auth DA], PE [auth AA], PEA [auth DA], PF [auth BA], PFA [auth DA], PG [auth BA], PGA [auth DA], PH [auth BA], PHA [auth DA], PI [auth BA], PIA [auth DA], PJ [auth BA], PK [auth BA], PL [auth BA], PM [auth BA], PN [auth BA], PO [auth BA], PP [auth BA], PQ [auth BA], PR [auth BA], PS [auth BA], PT [auth BF], PU [auth CA], PV [auth CA], PW [auth DA], PX [auth DA], PY [auth DA], PZ [auth DA], QAA [auth DA], QBA [auth DA], QCA [auth DA], QD [auth AA], QDA [auth DA], QE [auth AA], QEA [auth DA], QF [auth BA], QFA [auth DA], QG [auth BA], QGA [auth DA], QH [auth BA], QHA [auth DA], QI [auth BA], QIA [auth DA], QJ [auth BA], QK [auth BA], QL [auth BA], QM [auth BA], QN [auth BA], QO [auth BA], QP [auth BA], QQ [auth BA], QR [auth BA], QS [auth BA], QT [auth BP], QU [auth CA], QV [auth CA], QW [auth DA], QX [auth DA], QY [auth DA], QZ [auth DA], RAA [auth DA], RBA [auth DA], RCA [auth DA], RD [auth AA], RDA [auth DA], RE [auth AA], REA [auth DA], RF [auth BA], RFA [auth DA], RG [auth BA], RGA [auth DA], RH [auth BA], RHA [auth DA], RI [auth BA], RIA [auth DA], RJ [auth BA], RK [auth BA], RL [auth BA], RM [auth BA], RN [auth BA], RO [auth BA], RP [auth BA], RQ [auth BA], RR [auth BA], RS [auth BA], RT [auth BP], RU [auth CA], RV [auth CA], RW [auth DA], RX [auth DA], RY [auth DA], RZ [auth DA], SAA [auth DA], SBA [auth DA], SCA [auth DA], SD [auth AA], SDA [auth DA], SE [auth AA], SEA [auth DA], SF [auth BA], SFA [auth DA], SG [auth BA], SGA [auth DA], SH [auth BA], SHA [auth DA], SI [auth BA], SJ [auth BA], SK [auth BA], SL [auth BA], SM [auth BA], SN [auth BA], SO [auth BA], SP [auth BA], SQ [auth BA], SR [auth BA], SS [auth BA], ST [auth BP], SU [auth CA], SV [auth CA], SW [auth DA], SX [auth DA], SY [auth DA], SZ [auth DA], TAA [auth DA], TBA [auth DA], TCA [auth DA], TD [auth AA], TDA [auth DA], TE [auth AA], TEA [auth DA], TF [auth BA], TFA [auth DA], TG [auth BA], TGA [auth DA], TH [auth BA], THA [auth DA], TI [auth BA], TJ [auth BA], TK [auth BA], TL [auth BA], TM [auth BA], TN [auth BA], TO [auth BA], TP [auth BA], TQ [auth BA], TR [auth BA], TS [auth BA], TT [auth BQ], TU [auth CA], TV [auth CA], TW [auth DA], TX [auth DA], TY [auth DA], TZ [auth DA], UAA [auth DA], UBA [auth DA], UCA [auth DA], UD [auth AA], UDA [auth DA], UE [auth AA], UEA [auth DA], UF [auth BA], UFA [auth DA], UG [auth BA], UGA [auth DA], UH [auth BA], UHA [auth DA], UI [auth BA], UIA [auth DB], UJ [auth BA], UK [auth BA], UL [auth BA], UM [auth BA], UN [auth BA], UO [auth BA], UP [auth BA], UQ [auth BA], UR [auth BA], US [auth BA], UT [auth BQ], UU [auth CA], UV [auth CA], UW [auth DA], UX [auth DA], UY [auth DA], UZ [auth DA], VAA [auth DA], VBA [auth DA], VCA [auth DA], VD [auth AA], VDA [auth DA], VE [auth AA], VEA [auth DA], VF [auth BA], VFA [auth DA], VG [auth BA], VGA [auth DA], VH [auth BA], VHA [auth DA], VI [auth BA], VIA [auth DB], VJ [auth BA], VK [auth BA], VL [auth BA], VM [auth BA], VN [auth BA], VO [auth BA], VP [auth BA], VQ [auth BA], VR [auth BA], VS [auth BA], VT [auth BR], VU [auth CA], VV [auth CA], VW [auth DA], VX [auth DA], VY [auth DA], VZ [auth DA], WAA [auth DA], WBA [auth DA], WCA [auth DA], WD [auth AA], WDA [auth DA], WE [auth AA], WEA [auth DA], WF [auth BA], WFA [auth DA], WG [auth BA], WGA [auth DA], WH [auth BA], WHA [auth DA], WI [auth BA], WIA [auth DB], WJ [auth BA], WK [auth BA], WL [auth BA], WM [auth BA], WN [auth BA], WO [auth BA], WP [auth BA], WQ [auth BA], WR [auth BA], WS [auth BA], WT [auth BU], WU [auth CA], WW [auth DA], WX [auth DA], WY [auth DA], WZ [auth DA], XAA [auth DA], XBA [auth DA], XCA [auth DA], XD [auth AA], XDA [auth DA], XE [auth AA], XEA [auth DA], XF [auth BA], XFA [auth DA], XG [auth BA], XGA [auth DA], XH [auth BA], XHA [auth DA], XI [auth BA], XIA [auth DE], XJ [auth BA], XK [auth BA], XL [auth BA], XM [auth BA], XN [auth BA], XO [auth BA], XP [auth BA], XQ [auth BA], XR [auth BA], XS [auth BA], XT [auth BX], XU [auth CA], XW [auth DA], XX [auth DA], XY [auth DA], XZ [auth DA], YAA [auth DA], YBA [auth DA], YC [auth AA], YCA [auth DA], YD [auth AA], YDA [auth DA], YE [auth AA], YEA [auth DA], YF [auth BA], YFA [auth DA], YG [auth BA], YGA [auth DA], YH [auth BA], YHA [auth DA], YI [auth BA], YIA [auth DF], YJ [auth BA], YK [auth BA], YL [auth BA], YM [auth BA], YN [auth BA], YO [auth BA], YP [auth BA], YQ [auth BA], YR [auth BA], YS [auth BA], YT [auth CA], YU [auth CA], YV [auth D0], YW [auth DA], YX [auth DA], YY [auth DA], YZ [auth DA], ZAA [auth DA], ZBA [auth DA], ZC [auth AA], ZCA [auth DA], ZD [auth AA], ZDA [auth DA], ZE [auth AA], ZEA [auth DA], ZF [auth BA], ZFA [auth DA], ZG [auth BA], ZGA [auth DA], ZH [auth BA], ZHA [auth DA], ZI [auth BA], ZIA [auth DP], ZJ [auth BA], ZK [auth BA], ZL [auth BA], ZM [auth BA], ZN [auth BA], ZO [auth BA], ZP [auth BA], ZQ [auth BA], ZR [auth BA], ZS [auth BA], ZT [auth CA], ZU [auth CA], ZV [auth D3], ZW [auth DA], ZX [auth DA], ZY [auth DA], ZZ [auth DA]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.278 
• R-Value Work: 0.243 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 210.47	α = 90
b = 447.96	β = 90
c = 620.17	γ = 90

Software Package:

Software Name	Purpose
CBASS	data collection
PHASER	phasing
PHENIX	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-07-09 
Deposition Author(s): Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.
• This entry supersedes: 3OHC, 3OHD, 3OHJ, 3OHK

Revision History  

• Version 1.0: 2014-07-09
  Type: Initial release
  
• Version 1.1: 2014-12-10
  Changes: Other
• Version 1.2: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary