5TS8 | pdb_00005ts8

Z. MAYS CK2 KINASE ALPHA SUBUNIT IN COMPLEX WITH THE ATP-COMPETITIVE INHIBITOR 5,6-DIBROMOBENZOTRIAZOLE

PDB DOI: https://doi.org/10.2210/pdb5TS8/pdb

Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Organism(s): Zea mays
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-10-28 Released: 2018-01-17
Deposition Author(s): Winiewska, M., Kucinska, K., Czapinska, H., Piasecka, A., Bochtler, M., Poznanski, J.
Funding Organization(s): NCN, European Union

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.45 Å
R-Value Free:
0.169 (Depositor), 0.185 (DCC)
R-Value Work:
0.149 (Depositor)
R-Value Observed:
0.150 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

STRUCTURAL AND THERMODYNAMIC ANALYSIS OF 5,6-DIBROMOBENZOTRIAZOLE BINDING TO CASEIN KINASE 2 ALPHA

Winiewska, M., Kucinska, K., Czapinska, H., Piasecka, A., Bochtler, M., Poznanski, J.

To be published.

Macromolecule Content

Total Structure Weight: 41.49 kDa
Atom Count: 3,806
Modeled Residue Count: 332
Deposited Residue Count: 340
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein kinase CK2 catalytic subunit CK2 alpha-3	A	340	Zea mays	Mutation(s): 0 EC: 2.7.11.1
UniProt
Find proteins for P28523 (Zea mays) Explore P28523 Go to UniProtKB: P28523
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P28523
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 8 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
7M0 Query on 7M0 Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	5,6-DIBROMOBENZOTRIAZOLE C₆ H₃ Br₂ N₃ DULRVLLMOREPRG-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
TLA Query on TLA Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain C [auth A] MOL2 format, chain I [auth A] MOL2 format, chain C [auth A] mmCIF format, chain I [auth A] mmCIF format, chain C [auth A]	C [auth A], I [auth A]	L(+)-TARTARIC ACID C₄ H₆ O₆ FEWJPZIEWOKRBE-JCYAYHJZSA-N		Interactions Focus chain C [auth A] Focus chain I [auth A] Interactions & Density Focus chain C [auth A] Focus chain I [auth A]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain J [auth A] MOL2 format, chain J [auth A] mmCIF format, chain J [auth A]	J [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Interactions & Density Focus chain J [auth A]
BME Query on BME Download:Ideal Coordinates CCD File SDF format, chain H [auth A] MOL2 format, chain H [auth A] mmCIF format, chain H [auth A]	H [auth A]	BETA-MERCAPTOETHANOL C₂ H₆ O S DGVVWUTYPXICAM-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Interactions & Density Focus chain H [auth A]
DMS Query on DMS Download:Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A] mmCIF format, chain E [auth A]	E [auth A]	DIMETHYL SULFOXIDE C₂ H₆ O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain G [auth A] MOL2 format, chain K [auth A] MOL2 format, chain G [auth A] mmCIF format, chain K [auth A] mmCIF format, chain G [auth A]	G [auth A], K [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain K [auth A] Interactions & Density Focus chain G [auth A] Focus chain K [auth A]
ACT Query on ACT Download:Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A] mmCIF format, chain F [auth A]	F [auth A]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain F [auth A] Interactions & Density Focus chain F [auth A]
FMT Query on FMT Download:Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A] mmCIF format, chain D [auth A]	D [auth A]	FORMIC ACID C H₂ O₂ BDAGIHXWWSANSR-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]