5UXI

Protein 4 with aldehyde deformylating oxygenase activity from Nostoc puntiforme

• PDB DOI: https://doi.org/10.2210/pdb5UXI/pdb

• Classification: LYASE
• Organism(s): Nostoc punctiforme PCC 73102
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-02-22 Released: 2018-02-28 
• Deposition Author(s): Wilson, D.K., Mak, W.S., Siegel, J.B.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.268 
• R-Value Work: 0.205 
• R-Value Observed: 0.206 

Literature

Protein 4 with aldehyde deformylating oxygenase activity from Nostoc puntiforme

Wilson, D.K., Mak, W.S., Siegel, J.B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 27.09 kDa 
• Atom Count: 1,918 
• Modelled Residue Count: 220 
• Deposited Residue Count: 234 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aldehyde decarbonylase	A	234	Nostoc punctiforme PCC 73102	Mutation(s): 0  Gene Names: Npun_R1711 EC: 4.1.99.5
UniProt
Find proteins for B2J1M1 (Nostoc punctiforme (strain ATCC 29133 / PCC 73102)) Explore B2J1M1  Go to UniProtKB:  B2J1M1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
DDQ	B [auth A], C [auth A], D [auth A]	DECYLAMINE-N,N-DIMETHYL-N-OXIDE C12 H27 N O ZRKZFNZPJKEWPC-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.268 
• R-Value Work: 0.205 
• R-Value Observed: 0.206 
• Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.655	α = 90
b = 79.655	β = 90
c = 133.055	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-02-28 
Deposition Author(s): Wilson, D.K., Mak, W.S., Siegel, J.B.

Revision History  

• Version 1.0: 2018-02-28
  Type: Initial release
  
• Version 1.1: 2024-03-06
  Changes: Data collection, Database references