7Q6H | pdb_00007q6h

HUMAN JAK3 KINASE DOMAIN WITH 1-(4-((2-((1-methyl-1H-pyrazol-4-yl)amino)quinazolin-8-yl)amino)piperidin-1-yl)ethan-1-one


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 
    0.220 (Depositor), 0.227 (DCC) 
  • R-Value Work: 
    0.183 (Depositor) 

Starting Model: other
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wwPDB Validation 3D Report Full Report

Validation slider image for 7Q6H

Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history

Literature

Investigation of Janus Kinase (JAK) Inhibitors for Lung Delivery and the Importance of Aldehyde Oxidase Metabolism.

Wellaway, C.R.Baldwin, I.R.Bamborough, P.Barker, D.Bartholomew, M.A.Chung, C.W.Dumpelfeld, B.Evans, J.P.Fazakerley, N.J.Homes, P.Keeling, S.P.Lewell, X.Q.McNab, F.W.Morley, J.Needham, D.Neu, M.van Oosterhout, A.J.M.Pal, A.Reinhard, F.B.M.Rianjongdee, F.Robertson, C.M.Rowland, P.Shah, R.R.Sherriff, E.B.Sloan, L.A.Teague, S.Thomas, D.A.Wellaway, N.Wojno-Picon, J.Woolven, J.M.Coe, D.M.

(2022) J Med Chem 65: 633-664

  • DOI: https://doi.org/10.1021/acs.jmedchem.1c01765
  • Primary Citation Related Structures: 
    7Q6H, 7Q7I, 7Q7K, 7Q7L, 7Q7W

  • PubMed Abstract: 

    The Janus family of tyrosine kinases (JAK1, JAK2, JAK3, and TYK2) play an essential role in the receptor signaling of cytokines that have been implicated in the pathogenesis of severe asthma, and there is emerging interest in the development of small-molecule-inhaled JAK inhibitors as treatments. Here, we describe the optimization of a quinazoline series of JAK inhibitors and the results of mouse lung pharmacokinetic (PK) studies where only low concentrations of parent compound were observed. Subsequent investigations revealed that the low exposure was due to metabolism by aldehyde oxidase (AO), so we sought to identify quinazolines that were not metabolized by AO. We found that specific substituents at the quinazoline 2-position prevented AO metabolism and this was rationalized through computational docking studies in the AO binding site, but they compromised kinome selectivity. Results presented here highlight that AO metabolism is a potential issue in the lung.


  • Organizational Affiliation
    • GSK, Medicines Research Centre, Gunnels Wood Road, Stevenage, Hertfordshire SG1 2NY, U.K.

Macromolecule Content 

  • Total Structure Weight: 37.77 kDa 
  • Atom Count: 2,782 
  • Modeled Residue Count: 282 
  • Deposited Residue Count: 327 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Tyrosine-protein kinase JAK3A [auth AAA]327Homo sapiensMutation(s): 0 
Gene Names: JAK3
EC: 2.7.10.2
UniProt & NIH Common Fund Data Resources
Find proteins for P52333 (Homo sapiens)
Explore P52333 
Go to UniProtKB:  P52333
PHAROS:  P52333
GTEx:  ENSG00000105639 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP52333
Sequence Annotations
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Reference Sequence

Small Molecules

Binding Affinity Annotations 
IDSourceBinding Affinity
934 BindingDB:  7Q6H IC50: 50 (nM) from 1 assay(s)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free:  0.220 (Depositor), 0.227 (DCC) 
  • R-Value Work:  0.183 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.12α = 90
b = 75.244β = 90
c = 89.449γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data

  • Released Date: 2022-02-02 
  • Deposition Author(s): Chung, C.

Funding OrganizationLocationGrant Number
Other private--

Revision History  (Full details and data files)

  • Version 1.0: 2022-02-02
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Data collection, Derived calculations, Refinement description