8QPH

Crystal structure of Lymantria dispar CPV14 polyhedra 14 crystals

• PDB DOI: https://doi.org/10.2210/pdb8QPH/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Lymantria dispar
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2023-10-02 Released: 2023-11-08 
• Deposition Author(s): Trincao, J., Warren, A., Crawshaw, A., Sutton, G., Stuart, D., Evans, G.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.34 Å
• R-Value Free: 0.180 
• R-Value Work: 0.156 
• R-Value Observed: 0.157 

Starting Model: experimental

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 8QQC

Literature

VMXm - sub-micron microfocus beamline for macromolecular crystallography at Diamond Light Source

Warren, A.J., Trincao, J., Crawshaw, A.D., Beale, E., Duller, G., Stallwood, A., Lunnon, M., Littlewood, R., Prescott, A., Foster, A., Smith, N., Rehm, G., Gayadeen, S., Bloomer, C., Alianelli, L., Laundy, D., Sutter, J., Cahill, L., Evans, G.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 29.27 kDa 
• Atom Count: 2,226 
• Modelled Residue Count: 243 
• Deposited Residue Count: 249 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polyhedrin	A	249	Lymantria dispar	Mutation(s): 0  Gene Names: pod
UniProt
Find proteins for Q91IE3 (Lymantria dispar cypovirus 14) Explore Q91IE3  Go to UniProtKB:  Q91IE3

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GTP (Subject of Investigation/LOI)	B [auth A]	GUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O14 P3 XKMLYUALXHKNFT-UUOKFMHZSA-N
MG (Subject of Investigation/LOI)	C [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.34 Å
• R-Value Free: 0.180 
• R-Value Work: 0.156 
• R-Value Observed: 0.157 
• Space Group: I 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.189	α = 90
b = 103.189	β = 90
c = 103.189	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data reduction
xia2.multiplex	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-11-08 
Deposition Author(s): Trincao, J., Warren, A., Crawshaw, A., Sutton, G., Stuart, D., Evans, G.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2023-11-08
  Type: Initial release