Crystal structure of PA0012 complexed with cyclic-di-GMP from Pseudomonas aeruginosa
Hammons, N.A., Schnicker, N.J., Fuentes, E.J.To be published.
Experimental Data Snapshot
Starting Model: in silico
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PilZ domain-containing protein | 90 | Pseudomonas aeruginosa PA14 | Mutation(s): 0  Gene Names: PA0012 | ||
UniProt | |||||
Find proteins for Q9I7B4 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I7B4  Go to UniProtKB:  Q9I7B4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9I7B4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
C2E (Subject of Investigation/LOI) Query on C2E | B [auth A], C [auth A] | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) C20 H24 N10 O14 P2 PKFDLKSEZWEFGL-MHARETSRSA-N | |||
GOL Query on GOL | D [auth A], E [auth A], F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 50.317 | α = 90 |
b = 50.317 | β = 90 |
c = 90.596 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Aimless | data scaling |
DIALS | data reduction |
PHASER | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Library of Medicine (NIH/NLM) | United States | 1R01AI170557-01A1 |